Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i19
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10880.1 68416.m01310 hypothetical protein                          29   3.7  
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ...    28   4.9  
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    28   4.9  
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    28   4.9  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   4.9  
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    28   4.9  
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ...    28   4.9  
At1g16130.1 68414.m01933 wall-associated kinase, putative simila...    28   4.9  
At2g46180.1 68415.m05742 intracellular protein transport protein...    28   6.5  
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote...    27   8.6  
At3g14350.2 68416.m01814 leucine-rich repeat transmembrane prote...    27   8.6  
At3g14350.1 68416.m01815 leucine-rich repeat transmembrane prote...    27   8.6  
At1g16150.1 68414.m01935 wall-associated kinase, putative contai...    27   8.6  

>At3g10880.1 68416.m01310 hypothetical protein
          Length = 278

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 394 ELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKL 513
           E+Q   +EE + QVLC  +     + +T+  ++EEL  K+
Sbjct: 202 EIQIEQMEEYLNQVLCLNETEIKSESETDKNIVEELRAKV 241


>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
           (gb|AAC32062.1)
          Length = 278

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 671 AMSAMRLASCAVSRRASFNIVLACTNPA 588
           AM A++  S A+  R+  ++VLAC N A
Sbjct: 25  AMEAVKQGSAAIGLRSRSHVVLACVNKA 52


>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 262 IPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKS 375
           +PY   PD+V+ +G PL L+     +T  G  + I  S
Sbjct: 148 LPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTEEICSS 185


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 513 QLFI*LFNHTIICVHLDGRRVLARAQHLRNHLLQQPRL 400
           Q F   F  T + V + G+RV+    H+  + + QPRL
Sbjct: 160 QYFTPKFRGTHVDVEVKGKRVMKLLNHIETYEMDQPRL 197


>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 493  EELNKKLAFASESLAEANE-------KIIHFANALVTANAGLVQANTMLNEARRETAQLA 651
            +ELN KL    ESL EANE       +I+     L      L++A  ML       A+L 
Sbjct: 1128 QELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELC 1187

Query: 652  NRMADIAQD 678
              + ++ +D
Sbjct: 1188 EAVEELRKD 1196


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +1

Query: 211 IVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQP--HTVLITKEGVIQLIMKSKLP 384
           I NV+ ++ +  SESG I      +  VKQG P   +     V ++ EG + L  +   P
Sbjct: 470 IANVESRFASALSESGEIKV----EGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQP 525

Query: 385 YAVELQAWLL--EEVIPQVLCTGKYAPAVKMDTNYGVIEELNKK 510
             +   A +L  E V    +  G+ AP  +     GV E+ +K+
Sbjct: 526 GMIGKVASILGDENVNVSFMSVGRIAPGKQAVMAIGVDEQPSKE 569


>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
           (PRC2B) (PRS1) identical to GB:AAC32063 from
           [Arabidopsis thaliana] (Genetics 149 (2), 677-692
           (1998)); identical to cDNA proteasome subunit prc2b
           GI:2511585
          Length = 277

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 671 AMSAMRLASCAVSRRASFNIVLACTNPA 588
           AM A++  S A+  R+  ++VLAC N A
Sbjct: 25  AMEAVKQGSAAIGLRSRSHVVLACVNKA 52


>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
           to putative serine/threonine-specific protein kinase
           GI:7270012 from [Arabidopsis thaliana]
          Length = 748

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 190 VNCKQAVIVNVDKKYKTTYSESG-SIPYTPAPDNVVKQGDPLYLQPHTVLI 339
           VN     +V++     ++   +G S P TP P NV  QG P +L    +L+
Sbjct: 82  VNISLNGVVHIKAPVTSSGCSTGTSQPLTPPPLNVAGQGSPYFLTDKNLLV 132


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNE---ARRETAQLAN 654
           G+IE+LN+KLA    ++   N ++++   AL    A +        E   A+ +  +L+ 
Sbjct: 443 GIIEDLNQKLANCLRTIDSKNVELLNLQTALGQYYAEIEAKEHFERELAVAKEDAMKLSA 502

Query: 655 RMADI 669
           R+ D+
Sbjct: 503 RLKDV 507


>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 689

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 148 VKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQPH 327
           ++++ +  + S+ + N K A I+ +D +     S+SG   + P  + ++ Q D  Y  P 
Sbjct: 504 LEYLHEVCSPSIVHKNIKSANIL-LDSELNPHLSDSGLASFLPTANELLNQNDEGYSAPE 562

Query: 328 T 330
           T
Sbjct: 563 T 563


>At3g14350.2 68416.m01814 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 680

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 148 VKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQPH 327
           ++++ +  + S+ + N K A I+ +D +     S+SG   + P  + ++ Q D  Y  P 
Sbjct: 495 LEYLHEVCSPSIVHKNIKSANIL-LDSELNPHLSDSGLASFLPTANELLNQNDEGYSAPE 553

Query: 328 T 330
           T
Sbjct: 554 T 554


>At3g14350.1 68416.m01815 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 717

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 148 VKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQPH 327
           ++++ +  + S+ + N K A I+ +D +     S+SG   + P  + ++ Q D  Y  P 
Sbjct: 532 LEYLHEVCSPSIVHKNIKSANIL-LDSELNPHLSDSGLASFLPTANELLNQNDEGYSAPE 590

Query: 328 T 330
           T
Sbjct: 591 T 591


>At1g16150.1 68414.m01935 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 779

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 SESGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIM 369
           S   S P TP P NV  QG P +L    +L+     ++ +M
Sbjct: 108 STGTSQPLTPQPLNVAGQGSPYFLTDKNLLMAVGCNVKAVM 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,853,260
Number of Sequences: 28952
Number of extensions: 275779
Number of successful extensions: 756
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)