Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i18
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939... 35 0.058
02_01_0101 + 745924-747343,748077-748174 31 0.71
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381 30 2.2
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 29 2.9
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 29 3.8
03_01_0100 - 791425-792996 29 3.8
09_06_0174 + 21341416-21341556,21341690-21341787,21341908-213419... 29 5.0
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 28 6.6
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 28 6.6
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 28 8.7
05_05_0239 - 23543592-23544293,23544482-23544634,23544737-235449... 28 8.7
04_01_0078 - 879016-881288,884676-885141 28 8.7
>04_04_1427 +
33491847-33491888,33493504-33493623,33493740-33493976,
33494754-33495638,33495733-33495837,33495920-33496064,
33496146-33496310,33496391-33496629,33496724-33496756,
33496840-33496921,33497017-33497177,33497282-33497455,
33497549-33497731,33497832-33498019,33498155-33498251
Length = 951
Score = 35.1 bits (77), Expect = 0.058
Identities = 22/81 (27%), Positives = 44/81 (54%)
Frame = +2
Query: 410 GDLEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEW 589
G LE++K E +D + EE++++ + E GLS + +E GPN L K++ +
Sbjct: 2 GGLEEIKNEA-VDLENIPIEEVFEQLKCTRE-GLSSEEGNRRIEMFGPNKLEEKKES-KI 58
Query: 590 VKFCKNLFGGFALLLWIGAIL 652
+KF ++ + ++ + AI+
Sbjct: 59 LKFLGFMWNPLSWVMEMAAIM 79
>02_01_0101 + 745924-747343,748077-748174
Length = 505
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = +3
Query: 225 RRDREAACSFYPPVHRDLRKWASMDAP---------TRTASPPSARSRMIIEQLTDSS 371
RR+R++ C YP +RD+ AP TR PP R R +IE +D S
Sbjct: 278 RRNRKSFCRGYPHGYRDITVVVQDSAPSCIKYVEMVTRPGDPPPRRRRRLIEHNSDDS 335
>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
Length = 383
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 249 SFYPPVHRDLRKWASMDAPTRTASPPSARSRMIIEQLTDSSRH 377
S+ PP D+ S D P P SA RM+ S+RH
Sbjct: 318 SYQPPPTEDINGAGSADQPAWMTMPSSASKRMMPSSSAASTRH 360
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 7 PPEAGRRKSRLRHPRTLFLYRVLV*HQDDIVPVRCDQST*NAHILSFPFGRGSRKGPVV 183
P AGRRK++ FL+RV +P +T NA +LSF G G P V
Sbjct: 215 PVGAGRRKNKNATAAAHFLHRVRACAAAAAMPAAPHDAT-NATVLSFGGGGGGHDAPPV 272
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +2
Query: 281 KMGEHGRTDSYRVATIGPIEDDNRTADGQFXXXXXXXXXXXXXGDLEDLKQELDIDYHKV 460
K G H + + T G IEDD R DG F G + K+E D + +
Sbjct: 400 KDGGHSKQQDDKEKTAGNIEDDKR--DGFFRQLFKEKNEEKKEGTTPNKKEEDDKGHRTM 457
Query: 461 TPEELYQRF---QTHPENGLSHAKAKENLERDG 550
E ++R + + G +H + ++ +G
Sbjct: 458 DDENFFRRLFKDKNEEKKGAAHDRNDDDKCEEG 490
>03_01_0100 - 791425-792996
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 160 GSRKGPVVAELEQSHPAPLRDTDETERRLVPFIRLYIETYENGRAWTHRL 309
GS P A +HPA L DT + L +R +E + GRA+ HRL
Sbjct: 178 GSTGTPRWASAPFTHPATL-DTVAMDPDLKARVRADLENFLKGRAYYHRL 226
>09_06_0174 +
21341416-21341556,21341690-21341787,21341908-21341938,
21342046-21342345,21342960-21343070
Length = 226
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 231 DREAACSFYPPVHRDLRKWASMDAPTRTASPPSARSRMIIEQ 356
D+ A F PP HR L ++ DAP+ P + + R IEQ
Sbjct: 165 DKAVADGFIPPSHRHLFV-SAPDAPSLEGDPETPKLRWEIEQ 205
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/67 (25%), Positives = 24/67 (35%)
Frame = +2
Query: 461 TPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWI 640
TP E + GLS +A L R GPN L W + +L
Sbjct: 33 TPSECLAELGVAADRGLSSEEAAARLRRYGPNELERHAAPSVWKLVLEQFDDTLVRILLA 92
Query: 641 GAILCFI 661
A++ F+
Sbjct: 93 AAVVSFV 99
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 258 PPVHRDLRKWASM--DAPTRTASPPSARSRMIIEQLTDSSR 374
PP R LR AS DAP + A PP++ S +++ T++ +
Sbjct: 34 PPPRRALRVAASAAADAPPKPAPPPTSPSGIVLVDPTEAQK 74
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 294 MDAPTRTASPPSARSRMIIEQLTDSSRHAENLPRKNG 404
+DA + SPPS+ S + ++ + R A ++PR +G
Sbjct: 432 LDALSGMPSPPSSESAAAVSKVHELLREALSMPRSSG 468
>05_05_0239 -
23543592-23544293,23544482-23544634,23544737-23544922,
23544951-23545097,23545274-23545411,23545527-23545727
Length = 508
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 258 PPVHRDLRKWASMDAPTRTASPPSARS 338
PP R L++ A +DAP T PP+ RS
Sbjct: 405 PPTRRSLKEKADVDAPPET--PPTRRS 429
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 416 LEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLE 541
+EDLKQ ++ + KV EE Y+ Q +N L + LE
Sbjct: 502 VEDLKQLQELSHFKVRKEEAYRLKQLMKQNNLRGSLKISGLE 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,458
Number of Sequences: 37544
Number of extensions: 488317
Number of successful extensions: 1303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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