Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i18
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 84 1e-16
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 35 0.078
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_54942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.1
SB_41851| Best HMM Match : Pkinase (HMM E-Value=0) 28 8.9
SB_30958| Best HMM Match : rve (HMM E-Value=2.4e-15) 28 8.9
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 84.2 bits (199), Expect = 1e-16
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Frame = +2
Query: 293 HGRTDSYRVATIGPIEDDNRTAD------GQFXXXXXXXXXXXXXGDLEDLKQELDIDYH 454
+GRTDSYRVAT P+ + A G+ +E+LKQELD+D+H
Sbjct: 25 YGRTDSYRVAT-SPLMGEQAAAPEGGKKAGEKKQGKRAKKKKDQKEKMEELKQELDVDWH 83
Query: 455 KVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWV 592
++T EEL R T+ + GL+ +A L+RDGPNALTP TPEW+
Sbjct: 84 RITVEELMTRLDTNVQTGLTDEEAAIRLKRDGPNALTPTPTTPEWL 129
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 416 LEDLKQELDIDYHKVTPEELYQRFQTHPE 502
L+DLKQEL++D+HKV E L R + E
Sbjct: 67 LDDLKQELEVDWHKVPLEALVNRLDSSVE 95
>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +3
Query: 423 ISNRSWILITIKSLLR------NSTKDFKRTRKMALVMQKRKRT*KETAPMLLHHLNKHP 584
ISN SWIL+ + LL+ KD + + +L + RKR T + H LN H
Sbjct: 27 ISNLSWILVGLACLLQEVRRKPQPLKDKRIYSRSSLSDRSRKRPAPITTTVTNHRLNCHT 86
Query: 585 N 587
N
Sbjct: 87 N 87
>SB_54942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +3
Query: 246 CSFYPPVHRDLRKWASMDAPTRTASPPSARSRMIIEQLTDSSRHAENLPRKNGNQEI*KI 425
C Y V +L K + P+R A + R + +Q+T +HA + E+ K
Sbjct: 22 CISYANVEAELLKDSHYQVPSRVAGVLRMKRRNLAQQVTPYPKHAPTTGNSTSDLEVYKF 81
Query: 426 SNRS 437
S
Sbjct: 82 GTNS 85
>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 452 HKVTPEELYQRFQT-H--PENGLSHAKAKENLERDGPNALTP 568
++ PE L +T H P N LSH EN GP +LTP
Sbjct: 533 NRQNPEGLSSLLETVHNGPSNALSHHDVPENKAPGGPTSLTP 574
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 169 KGPVVA-ELEQSHPAPLRDTDETERRLVPFIRLYIETYENGR 291
+ P+ A EL +++ + D+ + + VP+I L I T +NGR
Sbjct: 1237 QSPIGALELRETNKLHVADSSKIDYESVPYIHLTISTTDNGR 1278
>SB_41851| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 967
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 467 EELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPE 586
E L+ RF + L+ + ++ P +TPP TPE
Sbjct: 82 ETLFSRFHARVNSRLAKNSSSKSGRGKSPQRVTPPPSTPE 121
>SB_30958| Best HMM Match : rve (HMM E-Value=2.4e-15)
Length = 470
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 13 EAGRRKSRLRHPRTLFLYRVLV*HQDDIVPVRCDQST*NAHILSFPFGRGSRKGPVVAEL 192
+AG R RL HP+ R + H + +P R QS +L P RG + G V ++
Sbjct: 98 DAGPRAVRLLHPQQNAEERRVGAHFSEQIPNRIHQS----DLLFLPTDRGYKYGLTVVDV 153
Query: 193 EQSHPA--PLR 219
+ A PLR
Sbjct: 154 SSRYKAACPLR 164
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 13 EAGRRKSRLRHPRTLFLYRVLV*HQDDIVPVRCDQST*NAHILSFPFGRGSRKGPVVAEL 192
+AG R RL HP+ R + H + +P R QS +L P RG + G V ++
Sbjct: 814 DAGPRAVRLLHPQQNAEERRVGAHFSEQIPNRIHQS----DLLFLPTDRGYKYGLTVVDV 869
Query: 193 EQSHPA--PLR 219
+ A PLR
Sbjct: 870 SSRYKAACPLR 880
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,274
Number of Sequences: 59808
Number of extensions: 505265
Number of successful extensions: 1244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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