Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i18
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 194 SSSATTGPLRLPRPNGKLKMCAFQVD 117
           S  +TTGP   P P  K +M A  +D
Sbjct: 377 SQKSTTGPPPGPTPAQKARMRALNID 402


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 487 KSLVEFLRSDFMVINIQLLFEIF*ISWFPFF 395
           + L +F +       + ++  +F I W PFF
Sbjct: 322 RKLAKFAKEKKAAKTLGIVMGVFIICWLPFF 352


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 448 INIQLLFEIF*ISWFPFF 395
           I + ++  +F I W PFF
Sbjct: 272 ITVGVIMGVFLICWVPFF 289


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 420 KISNRSWILITIKSLLRNSTKDFKRT 497
           K  N S    T  + LRN T DF+ T
Sbjct: 202 KSGNESKKYATSSNSLRNRTHDFQHT 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,164
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)