Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i18
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative ...    47   1e-05
At5g57350.1 68418.m07165 ATPase 3, plasma membrane-type / proton...    37   0.016
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    31   0.59 
At1g23560.1 68414.m02964 expressed protein contains Pfam profile...    30   1.8  
At3g60000.1 68416.m06699 hypothetical protein  contains Pfam pro...    28   5.5  
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    28   7.3  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    28   7.3  
At2g33360.1 68415.m04089 expressed protein                             28   7.3  
At1g05640.1 68414.m00585 ankyrin repeat family protein contains ...    27   9.6  

>At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to plasma membrane-type
           ATPase SP|P20431 and SP|P19456 {Arabidopsis thaliana};
           contains InterPro accession IPR001757: ATPase, E1-E2
           type
          Length = 813

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +2

Query: 410 GD-LEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPE 586
           GD LED+K E+D D  K+  EE++++ +   E GLS A+ KE L+  GPN L   K+   
Sbjct: 4   GDSLEDIKIEIDDDLEKIPIEEVFKKLRCSRE-GLSGAEGKERLKIFGPNKLENKKKEHI 62

Query: 587 WVKFCKNLFGGFALLLWIGAILCFI 661
            ++F   +F   + ++   AI+  +
Sbjct: 63  TLRFFALMFKPLSWVIQAAAIMAML 87


>At5g57350.1 68418.m07165 ATPase 3, plasma membrane-type / proton
           pump 3 nearly identical to SP|P20431 ATPase 3, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 3) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type
          Length = 949

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 24/79 (30%), Positives = 45/79 (56%)
 Frame = +2

Query: 416 LEDLKQELDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWVK 595
           LED+  E ++D  K+  EE++Q+ +   E GLS A+ +  L+  GPN L   K++ + +K
Sbjct: 5   LEDIVNE-NVDLEKIPIEEVFQQLKCSRE-GLSGAEGENRLQIFGPNKLEEKKES-KLLK 61

Query: 596 FCKNLFGGFALLLWIGAIL 652
           F   ++   + ++   AI+
Sbjct: 62  FLGFMWNPLSWVMEAAAIM 80


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +2

Query: 446 DYHKVTPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFA 625
           D +  +  E+   F   P  GLS ++   +    G N L   K+TP W    K       
Sbjct: 3   DAYARSVSEVLDFFGVDPTKGLSDSQVVHHSRLYGRNVLPEEKRTPFWKLVLKQFDDLLV 62

Query: 626 LLLWIGAILCFI 661
            +L + AI+ F+
Sbjct: 63  KILIVAAIVSFV 74


>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 332

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
 Frame = +2

Query: 437 LDIDYHKVTPEELYQRFQTHPENGLSHAKAKENLER-----DGPNALTPPKQTPEW 589
           L+I+     P EL     THP+N       KEN+ R     +GP      KQ   W
Sbjct: 108 LNIEADVGLPPELVYNIFTHPDNKRYFKNIKENISRKVLIDEGPKQTVEVKQAAAW 163


>At3g60000.1 68416.m06699 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 451

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 111 RSVNLKRTHFKFSIRAGEP*RSGCCRTRAVP-PCTVEGYRRDREAACSFYPPVHRDLRKW 287
           RSV+ +R   +  +  G+  RS     R++  P T+   R+  +   S   P++ +  + 
Sbjct: 68  RSVSAQRLRRQLKMADGDENRSSETAARSLDSPFTLSQSRKSSKP--SHLKPLNENSHR- 124

Query: 288 ASMDAPTRTASPPSARSRMIIEQLTDSSR 374
             ++ PT    PP +RSR+  ++L  ++R
Sbjct: 125 --LETPTPMVPPPPSRSRLSQQRLPTATR 151


>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 599 CKNLFGGFALLLW--IGAILCFIAYG 670
           CK   G F  LLW  + ++LC  AYG
Sbjct: 445 CKTALGSFVHLLWLDVHSLLCVSAYG 470


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 413 DLEDLKQELDIDYHKVT--PEELYQRFQTHPENGLSHAKAKENLER 544
           DL D +++L  D +K+    EEL +R +T  E  L H   +E L+R
Sbjct: 127 DLHDAERKLLSDKNKLNRAKEELEKREKTISEASLKHESLQEELKR 172


>At2g33360.1 68415.m04089 expressed protein
          Length = 603

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 257 IKGTSRLSVSSVSLNGAGWDCSSSATTGPLRLPRPNGKLKMCAFQVD 117
           +  T+ LS SS   + + W  SSS + G L+    + K     F +D
Sbjct: 230 LSSTNSLSSSSSEQSSSSWSPSSSVSQGTLQFTMKDNKTPHFVFSLD 276


>At1g05640.1 68414.m00585 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 627

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 587 WVKFCKNLFGGFALLLWIGAI-LCFIAYGIQASTVEEPR 700
           W+  C  + GG  +L  IGA+  C + + I+ S ++  R
Sbjct: 557 WLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKSLR 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,025
Number of Sequences: 28952
Number of extensions: 359328
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)