Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i17
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.3  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 130 KMLCIAADIKGQVEQLELVNQYLDAPKSEKLEFVYNCSDLDIN 258
           K+LC+  D    V++  L N +L     E LE  + C DLD N
Sbjct: 73  KLLCVRLD--NFVQEANLQNIHLVTVYLELLEKAFECIDLDDN 113


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 332 TVGALYLSVKYAIFLVKHRDFKSSSFISKSEQLYTNSSFSLL 207
           T+G +  SV  A+F +   D+ S SF++ +  L   +S ++L
Sbjct: 346 TIGFIIYSVLDALFDLLSLDYSSPSFLNNTLSLMNANSITIL 387


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 275  DFKSSSFISKSEQLYTNSSFSLLGASKYWFTSS 177
            D K++   +++  LY N+  +++GA +Y F+ +
Sbjct: 1165 DLKTNDPYAETNALYQNNPVAIMGAREYIFSEN 1197


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 223 EFVYNCSDLDINEEDLKSLCLTKNIAYFTERYNAPTVLKA 342
           + V+N +      E++ S  + KN+  F E++ A   LKA
Sbjct: 286 DIVFNYASSKKISEEMISQAIDKNLQEFEEKFQATFPLKA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,570
Number of Sequences: 5004
Number of extensions: 38637
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)