Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i17
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 29   2.5  
SB_30718| Best HMM Match : XPA_N (HMM E-Value=0.55)                    29   3.3  

>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 250 DINEEDLKSLCLTKNIAYFTERYNAPTVLKAQPAVYDAFIKHSELFINAICQMDEK 417
           D+N+EDL     T++ A F  R NA T+L+      D+F K        I ++ EK
Sbjct: 646 DMNDEDLLKAVCTRSKALFRLRRNAYTLLQYLCNDLDSFSKEMIEHTTTIDELIEK 701


>SB_30718| Best HMM Match : XPA_N (HMM E-Value=0.55)
          Length = 157

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 247 SRNNC--IQILAFHFWARLNIGLQVR 176
           SRN C  + IL+ HFW R++ G+  R
Sbjct: 125 SRNTCSALGILSLHFWQRVSCGIHPR 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,006,858
Number of Sequences: 59808
Number of extensions: 256643
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)