Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i16
(455 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64; Euk... 225 5e-58
UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1; Di... 173 2e-42
UniRef50_Q2HWB0 Cluster: CPSF A subunit, C-terminal; WD40-like; ... 163 1e-39
UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 158 5e-38
UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella ve... 155 3e-37
UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, who... 152 4e-36
UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene pr... 151 5e-36
UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|R... 151 7e-36
UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3; Dik... 140 1e-32
UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17; Di... 132 3e-30
UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 129 3e-29
UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1; ... 125 5e-28
UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2; Cryptosporid... 124 7e-28
UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n... 120 1e-26
UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1; ... 120 1e-26
UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=... 113 1e-24
UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 109 4e-23
UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1; ... 108 6e-23
UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 100 1e-20
UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1; ... 99 5e-20
UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=... 93 2e-18
UniRef50_Q4T683 Cluster: Chromosome undetermined SCAF8882, whole... 85 7e-16
UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1; ... 64 1e-09
UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Ere... 61 1e-08
UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1; ... 60 2e-08
UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 60 2e-08
UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep... 60 2e-08
UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n... 60 3e-08
UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella n... 53 3e-06
UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yar... 49 4e-05
UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Klu... 47 2e-04
UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 47 2e-04
UniRef50_Q0D7W9 Cluster: Os07g0203700 protein; n=5; Oryza sativa... 44 0.001
UniRef50_A2EPM8 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.005
UniRef50_Q4QJB3 Cluster: Putative uncharacterized protein; n=3; ... 42 0.008
UniRef50_A2EED7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.044
UniRef50_UPI00015B4ECC Cluster: PREDICTED: similar to cleavage a... 36 0.55
UniRef50_A2F6N7 Cluster: Putative uncharacterized protein; n=1; ... 34 1.3
UniRef50_A0E766 Cluster: Chromosome undetermined scaffold_80, wh... 34 1.3
UniRef50_Q687X5-2 Cluster: Isoform 2 of Q687X5 ; n=2; Homo/Pan/G... 34 1.7
UniRef50_Q687X5 Cluster: Metalloreductase STEAP4; n=32; Euteleos... 34 1.7
UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosom... 33 2.9
UniRef50_O77380 Cluster: Putative uncharacterized protein MAL3P6... 33 3.8
UniRef50_A2D9V0 Cluster: CPSF A subunit region family protein; n... 33 3.8
UniRef50_Q7NC21 Cluster: Elongation factor Ts; n=2; Mycoplasma g... 33 3.8
UniRef50_A5K7P9 Cluster: Putative uncharacterized protein; n=1; ... 32 6.7
UniRef50_Q10570 Cluster: Cleavage and polyadenylation specificit... 31 8.9
>UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64;
Eukaryota|Rep: Splicing factor 3B subunit 3 - Homo
sapiens (Human)
Length = 1217
Score = 225 bits (549), Expect = 5e-58
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 1092 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 1151
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 1152 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 1212 RTRYAF 1217
>UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: CPSF domain-containing
protein - Dictyostelium discoideum AX4
Length = 1256
Score = 173 bits (421), Expect = 2e-42
Identities = 76/123 (61%), Positives = 103/123 (83%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+ NF VG+TVT+L + +L+ GG E +LY TISG++G L+PFTSRED DFF LEM+MRS+
Sbjct: 1131 IANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSD 1190
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
PLCGRDHL++RSYY+PVKN+IDGDLCEQF++L+ KQ +I+ +L R+P+EV KKLE+I
Sbjct: 1191 CLPLCGRDHLAYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEI 1250
Query: 361 RTR 369
R++
Sbjct: 1251 RSQ 1253
>UniRef50_Q2HWB0 Cluster: CPSF A subunit, C-terminal; WD40-like;
n=1; Medicago truncatula|Rep: CPSF A subunit,
C-terminal; WD40-like - Medicago truncatula (Barrel
medic)
Length = 632
Score = 163 bits (397), Expect = 1e-39
Identities = 71/121 (58%), Positives = 94/121 (77%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+V FHVG+ ++ LQ+A+LIPGG E +L T+ GS+G L FTSR+D DFF HLEMHMR +
Sbjct: 510 IVQFHVGDVISCLQKASLIPGGGECILNGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQD 569
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
N PLCGRDH+++RS Y+PVK+VIDGDLCEQF +L Q+ IA +L+RT E+ KKLE+
Sbjct: 570 NPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTRGEILKKLEEY 629
Query: 361 R 363
+
Sbjct: 630 K 630
>UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Plasmodium falciparum 3D7|Rep: Splicing
factor 3b, subunit 3, 130kD, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1329
Score = 158 bits (384), Expect = 5e-38
Identities = 66/123 (53%), Positives = 96/123 (78%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+++FH+GE VTS+Q+ L P SE ++Y+TI G++G +P+ ++E+ + QHLE+ +R+E
Sbjct: 1205 MMSFHIGEIVTSMQKVRLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRTE 1264
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
PLCGR+H+ FRSYY+PV+NV+DGDLCEQF+SL QK IA DLERTP ++ +KLEDI
Sbjct: 1265 KPPLCGREHIFFRSYYHPVQNVVDGDLCEQFSSLSYDAQKKIANDLERTPEDILRKLEDI 1324
Query: 361 RTR 369
R +
Sbjct: 1325 RNK 1327
>UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1171
Score = 155 bits (377), Expect = 3e-37
Identities = 78/124 (62%), Positives = 95/124 (76%)
Frame = +1
Query: 7 NFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENS 186
N+ VGETV SLQ+ATLIPGGSE+L++ T+SG +G+L+PFTSRED DFFQHLEMH+RSE
Sbjct: 1064 NYFVGETVLSLQKATLIPGGSESLVFTTLSGGVGMLVPFTSREDIDFFQHLEMHLRSEQ- 1122
Query: 187 PLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRT 366
P +V+DGDLCE +NSLD K++ IA +L+RTPAEVSKKLEDIRT
Sbjct: 1123 ---------------PSLSVVDGDLCEHYNSLDYSKRRTIAEELDRTPAEVSKKLEDIRT 1167
Query: 367 RYAF 378
RYAF
Sbjct: 1168 RYAF 1171
>UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=3; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_9, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1178
Score = 152 bits (368), Expect = 4e-36
Identities = 65/123 (52%), Positives = 91/123 (73%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+ NF+VGE +TSLQ+ L+ SE ++Y T GS+ L PF ++ED DFF HLEM++R E
Sbjct: 1054 ICNFYVGEVITSLQKIALVSTSSEVVVYGTSMGSIAALYPFDNKEDIDFFLHLEMYLRVE 1113
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PL GRDH+ FRS Y P K++IDGDLC+QF ++ KQ+A+A + +RTPA++ KKLEDI
Sbjct: 1114 HQPLSGRDHMQFRSAYGPCKSIIDGDLCDQFGNMQYNKQRAVAEEFDRTPADIIKKLEDI 1173
Query: 361 RTR 369
R +
Sbjct: 1174 RNK 1176
>UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene
product; n=10; Plasmodium|Rep: Drosophila melanogaster
CG13900 gene product - Plasmodium yoelii yoelii
Length = 1235
Score = 151 bits (367), Expect = 5e-36
Identities = 65/123 (52%), Positives = 94/123 (76%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+++FH+GE VTSLQ+ L P SE ++Y+TI G++G +P+ S+E+ + QHLE+ +R+E
Sbjct: 1111 IMSFHIGEIVTSLQKVKLSPTSSECIIYSTIMGTIGAFIPYDSKEELELTQHLEIILRTE 1170
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
LCGR+H+ FRSYY+PV++VIDGDLCEQF+SL Q+ I DLE+TP E+ +KLEDI
Sbjct: 1171 KHSLCGREHIFFRSYYHPVQHVIDGDLCEQFSSLPFEVQRKIGSDLEKTPDEILRKLEDI 1230
Query: 361 RTR 369
R +
Sbjct: 1231 RNK 1233
>UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1196
Score = 151 bits (366), Expect = 7e-36
Identities = 66/118 (55%), Positives = 87/118 (73%)
Frame = +1
Query: 13 HVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPL 192
++GETV +L + L PGG E ++Y T G +G LLPF+SR + +FF HLEMHMR E +
Sbjct: 1076 YIGETVCALTKGALQPGGIEIIMYGTFMGGIGCLLPFSSRSEIEFFTHLEMHMRQEAPSI 1135
Query: 193 CGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRT 366
GRDH++FRSYY PVKNVIDGDLCEQF +L Q+ IA +++RTP E+ KKLE +R+
Sbjct: 1136 VGRDHMAFRSYYAPVKNVIDGDLCEQFGALPADVQRRIAEEMDRTPGEILKKLEQVRS 1193
>UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3;
Dikarya|Rep: Pre-mRNA-splicing factor RSE1 - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 1217
Score = 140 bits (340), Expect = 1e-32
Identities = 62/124 (50%), Positives = 90/124 (72%)
Frame = +1
Query: 7 NFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENS 186
++++G VTS+ + L+ GG + L+Y TISG++G L+PF S +D +F LEMHMR+++
Sbjct: 1094 HYNIGSVVTSITKIPLVAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDI 1153
Query: 187 PLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRT 366
L GRDH+++R YY P+K V+DGDLCE F+ L KQ+AIA DL+R+ +V KKLE +RT
Sbjct: 1154 SLVGRDHIAYRGYYVPIKGVVDGDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMRT 1213
Query: 367 RYAF 378
AF
Sbjct: 1214 SSAF 1217
>UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17;
Dikarya|Rep: Pre-mRNA-splicing factor rse1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1206
Score = 132 bits (319), Expect = 3e-30
Identities = 64/123 (52%), Positives = 83/123 (67%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
+ +F + TSLQ+ L+ G E LL+ + G++GV PF ++ED FFQ LE +R E
Sbjct: 1082 MAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKE 1141
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
PL GRDHL++RSYY PVK VIDGDLCE + SL Q+ IA +L+RT AEVSKK+ED
Sbjct: 1142 CPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIEDF 1201
Query: 361 RTR 369
R R
Sbjct: 1202 RVR 1204
>UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Babesia bovis|Rep: Splicing factor 3b,
subunit 3, 130kD, putative - Babesia bovis
Length = 1169
Score = 129 bits (311), Expect = 3e-29
Identities = 58/123 (47%), Positives = 83/123 (67%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
V FH+G+ T++ +A L + +LY T+ GS+G L+PF S+++ DF QHLEM M +E
Sbjct: 1046 VCQFHLGDLPTAMDKAALSQS-THVVLYGTVMGSIGALVPFQSKDELDFLQHLEMLMATE 1104
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
PLCGR+H +RSYY PV+ V+DGDLCEQF L +Q+ +A L+ T V +KL+DI
Sbjct: 1105 APPLCGREHSFYRSYYVPVQQVVDGDLCEQFRHLTEAQQRKVAQQLDTTVNNVLRKLDDI 1164
Query: 361 RTR 369
+ R
Sbjct: 1165 KNR 1167
>UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 1231
Score = 125 bits (301), Expect = 5e-28
Identities = 60/120 (50%), Positives = 83/120 (69%)
Frame = +1
Query: 10 FHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP 189
FH+G+ VTSLQR + P SE +LY T+ GS+GVL+PF S+++ DF QHLEM + ++
Sbjct: 1111 FHLGDIVTSLQRVRINPIHSEVVLYTTLMGSIGVLIPFVSKDELDFLQHLEMLLCNQIDT 1170
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTR 369
+ GR+ FRSYY+PV+N++DGDLCE F +L K +A L AEV KKL++IR R
Sbjct: 1171 VTGREVQMFRSYYFPVQNIVDGDLCEMFTALGDEKFN-VANQLNLKVAEVVKKLKNIRNR 1229
>UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2;
Cryptosporidium|Rep: CG13900 gene product -
Cryptosporidium hominis
Length = 1318
Score = 124 bits (300), Expect = 7e-28
Identities = 59/123 (47%), Positives = 78/123 (63%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
V FH+G+ VT LQ++ L P +EA++Y T+ GS+G L P + ED + LE+ +R +
Sbjct: 1194 VAQFHLGDIVTCLQKSQLTPTSAEAIIYGTVLGSIGSLSPILNNEDIELLSKLEILLRKQ 1253
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
S L RDHL FRSYY PV NVIDGD C+ F LD Q IA L+ T E+ KKL+D
Sbjct: 1254 KSTLLSRDHLMFRSYYSPVHNVIDGDFCQTFTILDSKIQSEIASKLDVTVEEIYKKLDDY 1313
Query: 361 RTR 369
+TR
Sbjct: 1314 KTR 1316
>UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n=1;
Theileria annulata|Rep: Splicing factor 3b subunit,
putative - Theileria annulata
Length = 1340
Score = 120 bits (290), Expect = 1e-26
Identities = 58/120 (48%), Positives = 82/120 (68%)
Frame = +1
Query: 10 FHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP 189
FH+G+ VTS QR + P SE +LY T+ GS+GVL+PF S+++ DF QHLEM M ++
Sbjct: 1221 FHLGDIVTSFQRVRINPIHSEVVLYTTLMGSIGVLVPFVSKDELDFLQHLEMLMCNQIDT 1280
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTR 369
+ GR+ FRSYY+PV+N++DGDLCE + +LD + IA L E+ KKL++IR R
Sbjct: 1281 VTGREVQMFRSYYFPVQNIVDGDLCEMYMTLD--DKYNIANQLNLKVNEIIKKLKNIRNR 1338
>UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 979
Score = 120 bits (290), Expect = 1e-26
Identities = 52/115 (45%), Positives = 76/115 (66%)
Frame = +1
Query: 7 NFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENS 186
+FH + T + + L+ GG E L+++ G++GV +PF +RED DFF LE HMR E
Sbjct: 773 HFHTQDIPTGITKTHLVVGGQEVLVWSGFQGTVGVFVPFVTREDADFFLALEQHMRGEEP 832
Query: 187 PLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKL 351
L GRDHL++R YY P K V+DGDLCE++ L K++ IA +L+R+ EV +K+
Sbjct: 833 SLIGRDHLAYRGYYEPAKGVVDGDLCERYQLLPGDKKQRIAAELDRSVREVERKI 887
>UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3B
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1145
Score = 113 bits (273), Expect = 1e-24
Identities = 54/118 (45%), Positives = 73/118 (61%)
Frame = +1
Query: 10 FHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP 189
F VG+ TS + +LIPG LY+ G L L+P S+ D DF+QHLEMHMR +
Sbjct: 1023 FFVGDIATSFAQCSLIPGAPSIFLYSNFMGGLSALIPLQSQNDIDFYQHLEMHMRVHWTN 1082
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIR 363
L R+H+SFRS PVK+ +DGDLCE + L Q+ IA ++E+ E+ KKL D+R
Sbjct: 1083 LTDRNHISFRSSIVPVKDTVDGDLCELYERLPYEIQQEIAEEMEKEVNEIIKKLHDLR 1140
>UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Candida
albicans|Rep: Pre-mRNA-splicing factor RSE1 - Candida
albicans (Yeast)
Length = 1219
Score = 109 bits (261), Expect = 4e-23
Identities = 47/126 (37%), Positives = 80/126 (63%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++ FH+G+ +TS L G+E+++Y + G++G+L+P S+ + + +L+++M+
Sbjct: 1094 LIEFHIGDIITSFNLGCLNLAGTESVIYTGLQGTIGLLIPLVSKSEVELLFNLQLYMQQS 1153
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ L G+DHL RSYY P+KNVIDGDL E+F D + I+ L ++ ++ KKL D+
Sbjct: 1154 QNNLVGKDHLKLRSYYNPIKNVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
Query: 361 RTRYAF 378
R R AF
Sbjct: 1214 RNRSAF 1219
>UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1273
Score = 108 bits (259), Expect = 6e-23
Identities = 47/106 (44%), Positives = 70/106 (66%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
V ++ + S+Q+ L+ G + +A + G+LG L+PF SR H FQ LE+ +RS+
Sbjct: 1118 VAHYFANDIPISIQKTHLLSGAERIIFWAGLQGTLGALIPFNSRRQHKMFQQLELQLRSD 1177
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDL 318
+ P+ GRDHL+FRSY+ PVK+VIDGDL E+F L K+++I G L
Sbjct: 1178 DKPMSGRDHLAFRSYFNPVKSVIDGDLIERFLVLSRDKRESIVGQL 1223
>UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomycetaceae|Rep: Pre-mRNA-splicing factor RSE1 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 1256
Score = 100 bits (240), Expect = 1e-20
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 13/139 (9%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRS- 177
+ F++ + TS + +L+ GG E+++Y I G+LG+LLP ++ + F L++ +R
Sbjct: 1118 ICEFYLQDIPTSFTKGSLVMGGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQLLLRKY 1177
Query: 178 ------------ENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLE 321
L G+DHL FRSYY PVKNV+DGDL E+F L + I +L
Sbjct: 1178 FDYNFDDFDKDKNGYNLLGKDHLKFRSYYNPVKNVMDGDLIERFYELSQSMKIRIGTELN 1237
Query: 322 RTPAEVSKKLEDIRTRYAF 378
RTP E+ KK+ ++R R AF
Sbjct: 1238 RTPREIEKKISEMRHRSAF 1256
>UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1206
Score = 98.7 bits (235), Expect = 5e-20
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 13/136 (9%)
Frame = +1
Query: 10 FHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP 189
F + + T + TL+ GG E++ Y + GSLG P S+ + FF LE +R P
Sbjct: 1071 FFLQDIPTLFFKGTLVTGGKESIFYTGLCGSLGFFEPLISKLEVSFFTALENSIRKVLDP 1130
Query: 190 -------------LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTP 330
L G+D L FR YY PVKNVIDGD E + LDP + IA +L+RTP
Sbjct: 1131 NLEEHDKKRLYCQLLGKDQLKFRGYYNPVKNVIDGDFVEYYFELDPRTKTKIATELDRTP 1190
Query: 331 AEVSKKLEDIRTRYAF 378
++ +K+ DIR+R AF
Sbjct: 1191 RDIERKIADIRSRVAF 1206
>UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3b
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1108
Score = 93.5 bits (222), Expect = 2e-18
Identities = 43/103 (41%), Positives = 60/103 (58%)
Frame = +1
Query: 55 IPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYP 234
I ++Y+ + G +GVL+PF RED +FF LEM +++ SPL S+R YP
Sbjct: 1001 IKENKNVIIYSCLMGRIGVLIPFNFREDVEFFSKLEMEIKNNYSPLLSNSFDSYRGTNYP 1060
Query: 235 VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIR 363
VIDGDLC+ FN +DP Q IA +LE TP ++ K E +
Sbjct: 1061 GIGVIDGDLCDYFNQMDPKLQLQIANNLEMTPVQIQLKCEQFK 1103
>UniRef50_Q4T683 Cluster: Chromosome undetermined SCAF8882, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8882,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 149
Score = 85.0 bits (201), Expect = 7e-16
Identities = 37/48 (77%), Positives = 45/48 (93%)
Frame = +1
Query: 235 VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTRYAF 378
V+NVIDGDLCEQ+NS++P KQK++A +L+RTP EVSKKLEDIRTRYAF
Sbjct: 102 VQNVIDGDLCEQYNSMEPHKQKSVAEELDRTPPEVSKKLEDIRTRYAF 149
>UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1223
Score = 64.5 bits (150), Expect = 1e-09
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 14/112 (12%)
Frame = +1
Query: 76 LLYATISGSLGVLLPFTSREDHDFFQHLEMHMR--------------SENSPLCGRDHLS 213
++Y I G++GVL+ ++ + + +L++ +R S SPL G+DHL
Sbjct: 1110 IVYTGIQGTIGVLILLLTKHEVELLFNLQLELRKLCNHDDDAVSGVASWISPL-GKDHLK 1168
Query: 214 FRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTR 369
RSY+ PVKN+IDGD E + L + I ++++P E+ K+L DIR R
Sbjct: 1169 HRSYFNPVKNIIDGDFVECYLQLLQNWKVKIGEAIDKSPNEIEKRLNDIRNR 1220
>UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Eremothecium gossypii|Rep: Pre-mRNA-splicing factor RSE1
- Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 1288
Score = 61.3 bits (142), Expect = 1e-08
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +1
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLE-RTPAEVSKKLEDIRT 366
L GRD + +RSYY PV++V DGDLCEQF L P ++ +A ++ R+ E+ +++ D+RT
Sbjct: 1226 LVGRDAMMYRSYYNPVRHVTDGDLCEQFLELYPSEKNFLAARVDNRSVQEIERRINDMRT 1285
Score = 35.1 bits (77), Expect = 0.72
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 73 ALLYATISGSLGVLLPFTSREDHDFFQHLEMHMR 174
++LYA + G++G L+P +R + +FF LE MR
Sbjct: 1142 SILYAGLQGTIGYLIPLITRREIEFFDLLEQAMR 1175
>UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1346
Score = 60.5 bits (140), Expect = 2e-08
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +1
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERT-PAEVSKKLEDIRT 366
+ R+H +RSYY PVKN+IDGDLCE+F L+ ++ I +L+ T P ++ +++ ++RT
Sbjct: 1284 IVNRNHSKYRSYYAPVKNIIDGDLCERFLYLNSNERLEICKNLKDTKPEDIIRQINEMRT 1343
Query: 367 RY 372
Y
Sbjct: 1344 SY 1345
>UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomyces cerevisiae|Rep: Pre-mRNA-splicing factor
RSE1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1361
Score = 60.5 bits (140), Expect = 2e-08
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 190 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAE-VSKKLEDIRT 366
+ GRDH +RSYY PV+ VIDGDLCE F L +Q+ +A +L+ E + + + ++RT
Sbjct: 1299 ILGRDHQEYRSYYAPVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEVRT 1358
Query: 367 RY 372
Y
Sbjct: 1359 NY 1360
>UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep:
RepE - Dictyostelium discoideum (Slime mold)
Length = 1139
Score = 60.1 bits (139), Expect = 2e-08
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLI--PGGSE----ALLYATISGSLGVLLPFTSREDHDFFQHLE 162
V ++H+GE++ S++ +L+ P + +LYA+++GS+GV+ S ED FF L+
Sbjct: 1005 VGHYHIGESINSMRHGSLVRLPDSDQPIIPTILYASVNGSIGVVASI-SEEDFIFFSKLQ 1063
Query: 163 MHMRSENSPLCGRDHLSFRSY---YYPV--KNVIDGDLCEQFNSLDPGKQKAIAGDLERT 327
+ + G H ++R++ ++ + KN IDGDL E F L Q DL T
Sbjct: 1064 KGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQLKAVADLGIT 1123
Query: 328 PAEVSKKLEDI 360
P + +++E +
Sbjct: 1124 PDDAFRRIESL 1134
>UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n=1;
Trichomonas vaginalis G3|Rep: CPSF A subunit region
family protein - Trichomonas vaginalis G3
Length = 1142
Score = 59.7 bits (138), Expect = 3e-08
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +1
Query: 10 FHVGETVTSLQRATLIPGGSE--ALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSEN 183
+H+G +T L L G E +++Y T+ G +G+ +P + D F+ LE M+
Sbjct: 1023 YHIGSPITGL---CLSQGDFENTSIVYGTVDGEIGLFIPLKTDTDARLFRLLEDEMKKLI 1079
Query: 184 SPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
GR FRSYY P+K V D +L + L QK IA L+ P ++S+ L +
Sbjct: 1080 KSPVGRFIEQFRSYYTPLKCVNDSNLLLSYIDLPTNLQKEIAEKLKVKPFDLSRLLAKV 1138
>UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella
natans|Rep: Splicing factor 3b - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP
621))
Length = 1158
Score = 53.2 bits (122), Expect = 3e-06
Identities = 29/97 (29%), Positives = 45/97 (46%)
Frame = +1
Query: 70 EALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVI 249
E ++Y T GS+G+L+P ++ + F++L H+ + + FRS Y VI
Sbjct: 1057 EIIIYFTNLGSIGILIPIKTKFEIVLFRNLFYHLTLGTNHFLSLSNFKFRSSNYISSRVI 1116
Query: 250 DGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
DGD C Q Q IA + +SK ED+
Sbjct: 1117 DGDFCSQILEFKKSTQLKIAKAIRIKITSISKIFEDL 1153
>UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yarrowia
lipolytica|Rep: Pre-mRNA-splicing factor RSE1 - Yarrowia
lipolytica (Candida lipolytica)
Length = 1143
Score = 49.2 bits (112), Expect = 4e-05
Identities = 22/80 (27%), Positives = 43/80 (53%)
Frame = +1
Query: 67 SEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNV 246
++ L+ + G++ +P S + + +E + + + L GRDH FR YY PVK V
Sbjct: 1042 NDYLVVCGLLGTVSAFVPVVSPKQSRDLKTIEKFVCASDPGLMGRDHGRFRGYYVPVKEV 1101
Query: 247 IDGDLCEQFNSLDPGKQKAI 306
+DGD+ + +D +++ +
Sbjct: 1102 VDGDMLREVLVMDEKRREEV 1121
>UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Kluyveromyces lactis|Rep: Pre-mRNA-splicing factor RSE1 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 1269
Score = 46.8 bits (106), Expect = 2e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +1
Query: 196 GRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAE----VSKKLEDIR 363
GRD LS+RS Y P KN+IDG+ EQ + P Q+ IA ++ + +K + ++R
Sbjct: 1206 GRDFLSYRSSYAPSKNIIDGETLEQLTTYLPSDQRWIASKMKHADSGKLDIFNKYINEMR 1265
Query: 364 TRY 372
T Y
Sbjct: 1266 TNY 1268
>UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Candida
glabrata|Rep: Pre-mRNA-splicing factor RSE1 - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 1296
Score = 46.8 bits (106), Expect = 2e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 202 DHLSFRSYYYPVKNVIDGDLCEQFNSL 282
DH ++RSYY PVKNVIDGD+CE + +L
Sbjct: 1237 DHTAYRSYYAPVKNVIDGDICETYLNL 1263
>UniRef50_Q0D7W9 Cluster: Os07g0203700 protein; n=5; Oryza
sativa|Rep: Os07g0203700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 666
Score = 44.4 bits (100), Expect = 0.001
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +1
Query: 85 ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFRSYYYP--VKNVID 252
+T+ GS+ V++P TS E+H Q ++ + + +PL G DH FR P V ++D
Sbjct: 559 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILD 617
Query: 253 GDLCEQFNSLDPGKQ 297
GD+ QF L +Q
Sbjct: 618 GDMLVQFLELTSEQQ 632
>UniRef50_A2EPM8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 994
Score = 43.6 bits (98), Expect = 0.002
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 79 LYATISGSLGVLLPFTSRE---DHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVI 249
LY+TISG LG +L + + + +F + +E+ + G H FR+ P +N++
Sbjct: 887 LYSTISGELGAILEINNEQLKMEAEFLKKIELKTAAYLQEKTGAMHYVFRNLTIPARNIL 946
Query: 250 DGDLCEQFNSLDPGKQKAIAGDLERT 327
D D+ F L+ ++ +I L T
Sbjct: 947 DLDIISIFMKLNKKEKTSIMSSLSVT 972
>UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1547
Score = 42.3 bits (95), Expect = 0.005
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
VV F + ET L + ++ ++ GS+ V + RE + +++ ++
Sbjct: 1408 VVQFSLKETCMKLYQLKSPLSNKNKIITCSLLGSVIVFGKLSKRE-YRILNNIQQILKKS 1466
Query: 181 NS--PLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDL 318
N+ PL DH +RS KN++DGDL QF LD Q I +
Sbjct: 1467 NNTRPLLNNDHQLYRSELSFSKNMLDGDLLFQFLFLDDEDQLTIINSI 1514
>UniRef50_Q4QJB3 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1980
Score = 41.5 bits (93), Expect = 0.008
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPG-GSEALL------YATISGSLGVLLPFTSREDHDFFQHL 159
V HVGE VT+L P G++A L Y+T GS+G +P S ED +L
Sbjct: 1825 VARHHVGELVTALHVQPYDPSQGTDAALATKIVYYSTALGSIGAYVPLLSEEDGALAAYL 1884
Query: 160 EMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 267
+ + S PL G + Y +V+DGD+ +
Sbjct: 1885 QPLLHSHMRPLLGPPP-ALPPASYLSHHVVDGDVAQ 1919
>UniRef50_A2EED7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1036
Score = 39.1 bits (87), Expect = 0.044
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE 162
V +F VGE VTSL ++ S+ L Y T+ G +GVL+P ++ E+ + +E
Sbjct: 917 VASFMVGEMVTSL----MVSPASKTLYYTTLLGQIGVLIPISNEEEFNSLASVE 966
>UniRef50_UPI00015B4ECC Cluster: PREDICTED: similar to cleavage and
polyadenylation specificity factor cpsf; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to cleavage and
polyadenylation specificity factor cpsf - Nasonia
vitripennis
Length = 1596
Score = 35.5 bits (78), Expect = 0.55
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = +1
Query: 79 LYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYY-------YPV 237
+YAT+ GSLG +LP + L+ + S + G + +FR+Y P
Sbjct: 1309 MYATLDGSLGYILPVPEKTYRRLLM-LQNVLVSHIYHIAGLNPKAFRTYKSCVRMQGNPA 1367
Query: 238 KNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ +IDGDL ++ L ++ IA + E+ + +I
Sbjct: 1368 RGIIDGDLVRKYLDLPVNEKIEIAKKIGTGAQEIMDDMHEI 1408
>UniRef50_A2F6N7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1116
Score = 34.3 bits (75), Expect = 1.3
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = +1
Query: 82 YATISGSLGVLLPFTSREDHDFFQHL---EMHMRSENSPLCGRDHLSFRSYYYPVKNVID 252
Y+TI+G +GV + ++ + L E+ + + L G + L R+ YP VID
Sbjct: 998 YSTITGEVGVFMSHIFNPNNPYLNILLGVELKVSEMLTKLTGINPLEKRNKQYPSSAVID 1057
Query: 253 GDLCEQFNSLDPGKQKAIAGDL-ERTPAEVSK-KLEDIRTRY 372
D+ E F + Q+ A +L E+ + + + D+ TRY
Sbjct: 1058 LDIVEMFADMPLQFQEDFARNLTEKYKMKFDRSSIIDLITRY 1099
>UniRef50_A0E766 Cluster: Chromosome undetermined scaffold_80, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_80,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 604
Score = 34.3 bits (75), Expect = 1.3
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 FFQHLEMHMRSENSPLCGRD-HLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIA 309
+F+ +MH+ S + L GR + + S+Y PVK + +G + F S+D + A+A
Sbjct: 75 YFEASQMHLESLKNALGGRVIYRNMASFYEPVKLIGEGLSAKVFQSIDKKSKNAVA 130
>UniRef50_Q687X5-2 Cluster: Isoform 2 of Q687X5 ; n=2;
Homo/Pan/Gorilla group|Rep: Isoform 2 of Q687X5 - Homo
sapiens (Human)
Length = 283
Score = 33.9 bits (74), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + G+++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDFLTEL 92
>UniRef50_Q687X5 Cluster: Metalloreductase STEAP4; n=32;
Euteleostomi|Rep: Metalloreductase STEAP4 - Homo sapiens
(Human)
Length = 459
Score = 33.9 bits (74), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + G+++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDFLTEL 92
>UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosoma
cruzi|Rep: Sf3b complex subunit 3 - Trypanosoma cruzi
Length = 1800
Score = 33.1 bits (72), Expect = 2.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = +1
Query: 13 HVGETVTSLQRATLIPGGS-------EALLYATISGSLGVLLPFTSREDHDFFQHLE 162
H G+ VT+L+ P G L YAT G++G PF ED F HL+
Sbjct: 1634 HTGQLVTALRVHDYDPSGGADPSLALRILFYATSLGTVGAYTPFVREEDAVFAAHLQ 1690
>UniRef50_O77380 Cluster: Putative uncharacterized protein MAL3P6.15;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein MAL3P6.15 - Plasmodium falciparum
(isolate 3D7)
Length = 2870
Score = 32.7 bits (71), Expect = 3.8
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +1
Query: 67 SEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY----- 231
++ +L A+ GS+ VL+PF+S + +E+ + S + H ++R Y
Sbjct: 2754 NDGILCASSEGSISVLIPFSSFANFKKALCIEIAITDNISSIGNLSHNAYREYKVNFRSK 2813
Query: 232 PVKNVIDGDLCEQFNSLDPGKQ 297
K ++DG+L + F + KQ
Sbjct: 2814 HCKGIVDGELLKMFFHMSFEKQ 2835
>UniRef50_A2D9V0 Cluster: CPSF A subunit region family protein; n=1;
Trichomonas vaginalis G3|Rep: CPSF A subunit region
family protein - Trichomonas vaginalis G3
Length = 1297
Score = 32.7 bits (71), Expect = 3.8
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +1
Query: 64 GSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKN 243
G Y T G +G P + H + +S LCG HL +RS + KN
Sbjct: 1185 GGHIAWYVTTHGKIGAFTPIDENDRHKLVGVQSAYEKS----LCGLSHLEYRSGKF--KN 1238
Query: 244 VIDGDLCEQ 270
+I+ D+ Q
Sbjct: 1239 MIEQDIFNQ 1247
>UniRef50_Q7NC21 Cluster: Elongation factor Ts; n=2; Mycoplasma
gallisepticum|Rep: Elongation factor Ts - Mycoplasma
gallisepticum
Length = 292
Score = 32.7 bits (71), Expect = 3.8
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 16 VGETVTSLQRATLIP--GGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP 189
+GE + SL+R + S Y + +GV++ + +D +F +HL MH+ + N
Sbjct: 132 IGEKI-SLRRVAFVKEEANSSLATYLHSNSRIGVIVKTSKTDDKEFLKHLAMHIAASNPK 190
Query: 190 LCGRDHLS 213
+ +S
Sbjct: 191 FVSQKDVS 198
>UniRef50_A5K7P9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 2558
Score = 31.9 bits (69), Expect = 6.7
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +1
Query: 70 EALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPV---- 237
+++L A+ GS+ L+PF++ +E+ + S L H S+R Y +
Sbjct: 2443 QSILCASSEGSISALIPFSNFLQFKRALCIEIAINDNISSLGNLSHSSYREYKVSLASKN 2502
Query: 238 -KNVIDGDLCEQF 273
K V+DG+L + F
Sbjct: 2503 CKGVVDGELFKMF 2515
>UniRef50_Q10570 Cluster: Cleavage and polyadenylation specificity
factor subunit 1; n=29; Deuterostomia|Rep: Cleavage and
polyadenylation specificity factor subunit 1 - Homo
sapiens (Human)
Length = 1443
Score = 31.5 bits (68), Expect = 8.9
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 82 YATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPVKN 243
+AT+ G +G+LLP + Q+ M ++ L R H+ R+ V+N
Sbjct: 1338 FATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRN 1397
Query: 244 VIDGDLCEQFNSLDPGKQKAIAGDLERTP 330
V+DG+L ++ L ++ +A + TP
Sbjct: 1398 VLDGELLNRYLYLSTMERSELAKKIGTTP 1426
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,597,582
Number of Sequences: 1657284
Number of extensions: 8344921
Number of successful extensions: 18877
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 18498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18871
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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