Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i16
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   182   1e-46
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    44   4e-05
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131...    28   4.1  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    27   9.5  
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    27   9.5  

>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
            1982950-1983087
          Length = 1228

 Score =  182 bits (443), Expect = 1e-46
 Identities = 80/123 (65%), Positives = 99/123 (80%)
 Frame = +1

Query: 1    VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
            +V FHVG+ VT LQ+A+LIPGG E L+Y T+ GS+G LL FTSRED DFF HLEMH+R E
Sbjct: 1104 IVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQE 1163

Query: 181  NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
            + PLCGRDH+++RS Y+PVK+VIDGDLCEQF SL    Q+ IA +L+RTP E+ KKLEDI
Sbjct: 1164 HPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDI 1223

Query: 361  RTR 369
            R +
Sbjct: 1224 RNK 1226


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +1

Query: 85   ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFRSYYYP--VKNVID 252
            +T+ GS+ V++P TS E+H   Q ++  + +    +PL G DH  FR    P  V  ++D
Sbjct: 1196 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILD 1254

Query: 253  GDLCEQFNSLDPGKQ 297
            GD+  QF  L   +Q
Sbjct: 1255 GDMLVQFLELTSEQQ 1269


>03_06_0014 -
           31012116-31012229,31012773-31012985,31013058-31013171,
           31013909-31014040,31014624-31014692,31014763-31015017,
           31015347-31015520,31016104-31016280,31016999-31017107,
           31017343-31017506,31018221-31018517
          Length = 605

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +1

Query: 13  HVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPL 192
           HV  T+TS  R+T      E L  A        L P+ SR+D+       M+       L
Sbjct: 144 HVKRTITSETRSTENEEDHEVLHDAFDDNDEDGLAPYGSRDDNKHAHESLMNDEGPYEEL 203

Query: 193 CGRDHLSFRSYYYPVKNV 246
              D +    +Y P +N+
Sbjct: 204 LPEDMVDEDKHYEPDENI 221


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 254 EIYVNSLTP*TLENKKPSQVIWNVLPPKYQKNLKTFELDMRSN 382
           E YVN L    + N  P  V  + LPP    +++ F L +  N
Sbjct: 339 ESYVNMLKNNVVRNDDPGSVSASSLPPYVYLHVEQFRLKLSDN 381


>02_04_0619 - 24481641-24482291,24482426-24482640,24482770-24483154,
            24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 82   YATISG--SLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYP--VKNVI 249
            + T +G  S+G L PFT   +HD + H+ ++   +             S Y+P  V+  +
Sbjct: 814  FITFNGKLSVGKLPPFTLPVNHDGYMHIYVYAYQDQLDDARHTPDGVISDYFPGCVRFDL 873

Query: 250  DGDLCEQFNSLDPGK 294
            +  LCE   SL P K
Sbjct: 874  EEFLCES-RSLTPQK 887


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,448
Number of Sequences: 37544
Number of extensions: 216443
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)