Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i16
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   7e-15
SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   1e-12
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          27   5.6  
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 27   7.4  
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      27   9.7  

>SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = +1

Query: 241 NVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDIRTRYAF 378
           +V+DGDLCE +NSLD  K++ IA +L+RTPAEVSKKLEDIRTRYAF
Sbjct: 1   SVVDGDLCEHYNSLDYSKRRTIAEELDRTPAEVSKKLEDIRTRYAF 46


>SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 30/43 (69%), Positives = 39/43 (90%)
 Frame = +1

Query: 7   NFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSRE 135
           N+ VGETV SLQ+ATLIPGGSE+L++ T+SG +G+L+PFTSRE
Sbjct: 131 NYFVGETVLSLQKATLIPGGSESLVFTTLSGGVGMLVPFTSRE 173


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 28   VTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMH 168
            +T+  +++LI   S++LL  T S SL +         HDFF  +  H
Sbjct: 872  ITTSSQSSLITTSSQSLLITTSSQSLLITTSSQVITHHDFFSIITHH 918


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 265 EQFNSLDPGKQKAIAGDLERTPAEVSKK 348
           E F +L+PGK+K   G+  RT   V +K
Sbjct: 162 ETFEALEPGKKKDGQGERSRTEETVQEK 189


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 265 EQFNSLDPGKQKAIAGDLERTPAEVSKK 348
           E F +L+PGK+K   G+  RT   V +K
Sbjct: 200 ETFEALEPGKKKDGQGERSRTEETVQEK 227


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = +1

Query: 82   YATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY-------PVK 240
            + T+ G+LG++LP T +        L+  +      + G +  +FR   +       P +
Sbjct: 892  FGTLDGALGLMLPMTEKTFRRLHM-LQTKLVDCIPHVAGLNPKAFRMLQWRKRKLCNPHR 950

Query: 241  NVIDGDLCEQFNSLDPGKQKAIAGDLERTPAE 336
            NV+D  L  ++  L   +++ +A  +  TPA+
Sbjct: 951  NVLDWQLLFKYMHLSFMERQEVARKIGTTPAQ 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,822
Number of Sequences: 59808
Number of extensions: 248603
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)