Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i16
(455 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 225 7e-59
D13642-1|BAA02805.1| 399|Homo sapiens KIAA0017 protein. 225 7e-59
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 225 7e-59
BC003146-1|AAH03146.1| 399|Homo sapiens SF3B3 protein protein. 225 7e-59
BC000463-1|AAH00463.1| 399|Homo sapiens SF3B3 protein protein. 225 7e-59
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 225 7e-59
BC020600-1|AAH20600.1| 283|Homo sapiens STEAP4 protein protein. 34 0.27
AF423423-1|AAQ04064.1| 494|Homo sapiens six transmembrane prost... 34 0.27
AF423422-1|AAQ04063.1| 459|Homo sapiens six transmembrane prost... 34 0.27
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 31 1.4
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 31 1.4
AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation specifi... 31 1.4
AK026806-1|BAB15559.1| 283|Homo sapiens protein ( Homo sapiens ... 31 1.9
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 1128 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 1187
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 1188 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1247
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 1248 RTRYAF 1253
>D13642-1|BAA02805.1| 399|Homo sapiens KIAA0017 protein.
Length = 399
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 274 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 333
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 334 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 393
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 394 RTRYAF 399
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, subunit
3, 130kDa protein.
Length = 1217
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 1092 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 1151
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 1152 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 1212 RTRYAF 1217
>BC003146-1|AAH03146.1| 399|Homo sapiens SF3B3 protein protein.
Length = 399
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 274 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 333
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 334 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 393
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 394 RTRYAF 399
>BC000463-1|AAH00463.1| 399|Homo sapiens SF3B3 protein protein.
Length = 399
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 274 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 333
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 334 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 393
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 394 RTRYAF 399
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP 130
protein.
Length = 1217
Score = 225 bits (549), Expect = 7e-59
Identities = 96/126 (76%), Positives = 116/126 (92%)
Frame = +1
Query: 1 VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
++N+HVGETV SLQ+ TLIPGGSE+L+Y T+SG +G+L+PFTS EDHDFFQH+EMH+RSE
Sbjct: 1092 IMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSE 1151
Query: 181 NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
+ PLCGRDHLSFRSYY+PVKNVIDGDLCEQFNS++P KQK ++ +L+RTP EVSKKLEDI
Sbjct: 1152 HPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDI 1211
Query: 361 RTRYAF 378
RTRYAF
Sbjct: 1212 RTRYAF 1217
>BC020600-1|AAH20600.1| 283|Homo sapiens STEAP4 protein protein.
Length = 283
Score = 33.9 bits (74), Expect = 0.27
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + G+++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDFLTEL 92
>AF423423-1|AAQ04064.1| 494|Homo sapiens six transmembrane prostate
protein 2 variant 2 protein.
Length = 494
Score = 33.9 bits (74), Expect = 0.27
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + G+++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDFLTEL 92
>AF423422-1|AAQ04063.1| 459|Homo sapiens six transmembrane prostate
protein 2 variant 1 protein.
Length = 459
Score = 33.9 bits (74), Expect = 0.27
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + G+++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSGIIIIAIHREHYDFLTEL 92
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 82 YATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPVKN 243
+AT+ G +G+LLP + Q+ M ++ L R H+ R+ V+N
Sbjct: 1337 FATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRN 1396
Query: 244 VIDGDLCEQFNSLDPGKQKAIAGDLERTP 330
V+DG+L ++ L ++ +A + TP
Sbjct: 1397 VLDGELLNRYLYLSTMERSELAKKIGTTP 1425
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenylation
specific factor 1, 160kDa protein.
Length = 1443
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 82 YATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPVKN 243
+AT+ G +G+LLP + Q+ M ++ L R H+ R+ V+N
Sbjct: 1338 FATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRN 1397
Query: 244 VIDGDLCEQFNSLDPGKQKAIAGDLERTP 330
V+DG+L ++ L ++ +A + TP
Sbjct: 1398 VLDGELLNRYLYLSTMERSELAKKIGTTP 1426
>AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation
specificity factor protein.
Length = 216
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 82 YATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPVKN 243
+AT+ G +G+LLP + Q+ M ++ L R H+ R+ V+N
Sbjct: 111 FATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRN 170
Query: 244 VIDGDLCEQFNSLDPGKQKAIAGDLERTP 330
V+DG+L ++ L ++ +A + TP
Sbjct: 171 VLDGELLNRYLYLSTMERSELAKKIGTTP 199
>AK026806-1|BAB15559.1| 283|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23153 fis, clone LNG09441. ).
Length = 283
Score = 31.1 bits (67), Expect = 1.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 40 QRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHL 159
Q+ TL+P G+E L Y+ + +++ RE +DF L
Sbjct: 53 QKTTLLPSGAEVLSYSEAAKKSDIIIIAIHREHYDFLTEL 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,294,857
Number of Sequences: 237096
Number of extensions: 1335962
Number of successful extensions: 6961
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6958
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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