Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i16
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   176   7e-45
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    27   4.9  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   6.5  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    27   8.6  
AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    27   8.6  
AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  176 bits (428), Expect = 7e-45
 Identities = 77/126 (61%), Positives = 104/126 (82%)
 Frame = +1

Query: 1    VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 180
            V NF +G+T+TSLQ+ +L+PG +EAL+Y TI G++G L+ F S+++ DFF +LEMH+RSE
Sbjct: 1095 VSNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLVSFMSKDEVDFFTNLEMHVRSE 1154

Query: 181  NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 360
              PLCGRDHL++RSYY P K+VIDGD+CEQF+ +D  KQK +A +L +T +E+SKKLEDI
Sbjct: 1155 YPPLCGRDHLAYRSYYAPCKSVIDGDICEQFSLMDTQKQKDVAEELGKTVSEISKKLEDI 1214

Query: 361  RTRYAF 378
            RTRYAF
Sbjct: 1215 RTRYAF 1220


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 154 HLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 255
           H  +H RSEN P    D    R++ YP+   + G
Sbjct: 162 HTNIHYRSENEPFRKYDVYGLRTWSYPIYKYVYG 195


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
            M18.5 protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
 Frame = +1

Query: 67   SEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY----- 231
            S+ +++ T  G++G+++    +    F   +E  +          +H S+R++ +     
Sbjct: 1020 SQPIMFGTNQGTIGMIVQIDDKWKK-FLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAE 1078

Query: 232  PVKNVIDGDLCEQFNSLDPG---------KQKAIAGDLERTPAEVSKKLEDI 360
            P    +DGDL E    +D             K     L R P E+ K +ED+
Sbjct: 1079 PPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDL 1130


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 4   VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 159
           + F VG+ V  +++A L P GS A    T +  +GVLL    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 4   VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 159
           + F VG+ V  +++A L P GS A    T +  +GVLL    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 DPGKQKAIAGDLERTPAEVSKKLEDIRT 366
           DP K  A+ G+L   P EV ++LE  +T
Sbjct: 24  DPNKAMALLGELMAHPREVMEQLEKYKT 51


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 25  TVTSLQRATLIPGGSEALLYATISGSLG 108
           TV+S Q +T IP  S + +Y+T+SGS G
Sbjct: 584 TVSS-QPSTYIPVSSASSIYSTLSGSTG 610


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPL 192
           GSL   L F SR   D F  ++ H+R +  PL
Sbjct: 70  GSLLARLQFLSRTYEDEFDSIQFHLRRKFKPL 101


>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 247 IDGDLCEQFNSLDPGKQKAIAGDLE 321
           + GD CE+    +PGK K + G  E
Sbjct: 80  LSGDRCEKVTYCEPGKGKLVEGKCE 104


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPL 192
           GSL   L F SR   D F  ++ H+R +  PL
Sbjct: 70  GSLLARLQFLSRTYEDEFDSIQFHLRRKFKPL 101


>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 148 FQHLEMHMRSENSPLCGRDHLSFRSYY 228
           F HL + MRS    L  RD  +F SYY
Sbjct: 243 FVHLSLIMRSATKKLSKRDKDAFVSYY 269


>AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical
           protein C36B7.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 112 LLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 255
           +L +     H F   LE +     S LCGR  L+ R Y   +K+++ G
Sbjct: 193 MLDYDHFRGHHFIV-LENYQTDLASYLCGRSKLTPREYIPMIKSIVHG 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,465
Number of Sequences: 27780
Number of extensions: 203005
Number of successful extensions: 440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)