BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10i15 (425 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 33 0.099 SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 29 2.1 SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9 SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9 SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 27 8.6 SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 27 8.6 >SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) Length = 1120 Score = 33.1 bits (72), Expect = 0.099 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 35 PLAID--LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 190 PL D L H P S R K + KR P P ++K P Y++TT+ +H+ RV Sbjct: 404 PLTRDPTLTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459 >SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) Length = 525 Score = 28.7 bits (61), Expect = 2.1 Identities = 8/25 (32%), Positives = 18/25 (72%) Frame = +2 Query: 206 CSTILCQPTGGRARLTEGCSFRRKQ 280 C ++CQ + ++R T+GC ++R++ Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254 >SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 614 Score = 27.5 bits (58), Expect = 4.9 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +2 Query: 137 KCPGCYKITTVFSHAQRVVVCAGC 208 +CP CY ++ V + Q V C+ C Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231 Score = 26.6 bits (56), Expect = 8.6 Identities = 11/43 (25%), Positives = 21/43 (48%) Frame = +2 Query: 80 RKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC 208 R + + +++P+ + +CP CY ++ V Q V C C Sbjct: 306 RCYPVSKVLPNVRGF---TQCPRCYPVSKVLPSVQGVTRCPRC 345 >SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 487 Score = 27.5 bits (58), Expect = 4.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 92 LKRLVPHPNSYFMDVKCPGCYKI 160 ++RLVP NSY + + GC I Sbjct: 95 VRRLVPRTNSYILSIDLEGCTSI 117 >SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) Length = 517 Score = 26.6 bits (56), Expect = 8.6 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +3 Query: 108 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 206 H T + W+L ++ + Q + +R+W SA D Sbjct: 473 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 505 >SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) Length = 158 Score = 26.6 bits (56), Expect = 8.6 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +3 Query: 108 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 206 H T + W+L ++ + Q + +R+W SA D Sbjct: 114 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 146 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,978,398 Number of Sequences: 59808 Number of extensions: 237515 Number of successful extensions: 563 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 814166562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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