Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i14
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   0.54 
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    24   3.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   5.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   6.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   6.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   8.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    23   8.8  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    23   8.8  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    23   8.8  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    23   8.8  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  DNYSLHNFYNNNRKPLKPTTLHDGNIK 117
           DNYSL  F N N  P KP+  H   +K
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMK 138


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 83  SSRQRYTMVTLKKSVYENITY 145
           SSR  ++MVTLKK+ ++   +
Sbjct: 43  SSRSGFSMVTLKKAFFDKYIF 63


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 40  NYSLHNFYNNNRKPLKP 90
           NY+  N YN N K  KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 187  VLARHIFFAHQLANICDIFVNRFF*CYHRVTLSA*EVCGC 68
            +L   +   ++L +I  I   +FF C+   TL   E+ GC
Sbjct: 1310 ILHAWVIIRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGC 1349


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 70   CCCKNCATNNYP*CSTGNITDA 5
            CCC  C +   P    GNI  A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 82  EVCGCCCKNCATNNY 38
           ++ G CC+NC   NY
Sbjct: 155 QIEGWCCQNCDILNY 169


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 160 HQLANICDIFVNRFF*CYHRVTLSA*EVC 74
           H   N C I  ++    YHR  LS+  +C
Sbjct: 237 HDFRNFCKIDASKQITNYHRRILSSKVIC 265


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 82  LKPTTLHDGNIKKIGLRKYHICSQADVQRKYAW 180
           L P  L   NI  +G   YH  +  +  R YAW
Sbjct: 271 LTPQPLALKNIISVGAGSYHSFAIDNKGRVYAW 303


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 16  YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKK 120
           +CL CT+    L  FY    K +K T +   N +K
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRK 150


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 70  NRKPLKPTTLHDGNIKKIGLRKYHICSQADVQRKYAWR 183
           NR+PLK    H  N+  + + + +I S +       WR
Sbjct: 292 NRRPLKVYFGHTDNVLGVVVSENYIISSSRDHTARVWR 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,371
Number of Sequences: 5004
Number of extensions: 13576
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)