Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i14
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54463| Best HMM Match : TolA (HMM E-Value=0.39)                     28   1.4  
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.4  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   1.8  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 26   4.2  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.3  
SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5)                  25   9.7  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           25   9.7  
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    25   9.7  
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_54463| Best HMM Match : TolA (HMM E-Value=0.39)
          Length = 461

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 88  PTTLHDGNIKKIGLRKYHICSQADVQRKYAWRARSQVLQSRL*QRKQI 231
           PT+ +DG+  K   +  H C+QA  Q+K A R   +   S+   RK I
Sbjct: 71  PTSANDGDTSKENQQLLHKCAQA--QKKKAKRKNQRPKTSKRRSRKDI 116


>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1178

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 142 CDIFVNRFF*CYHRVTLSA*EVCGCCCKNCATNNYP*CSTG 20
           C +FV++ F   H  T     VC CC + C    +P C  G
Sbjct: 692 CGMFVHQDFPWLHG-TPDFLSVCDCCGEGCGEVKFPFCLDG 731


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 112 IKKIGLRKYHICSQADVQRKYAWRARSQVLQSRL*QRKQI 231
           +KK G R  +ICS+ D  R++ W +   V   R+ QRK++
Sbjct: 874 VKKNG-RTVYICSEPDCNREFPWPS-WLVKHRRIHQRKKV 911


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 73  GCCCKNCATNN 41
           GCCCKNC+  +
Sbjct: 314 GCCCKNCSNKS 324


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  CCTMDNYSLHNFYNNNR 75
           C   DNY+  NFYN+ R
Sbjct: 108 CIVRDNYASRNFYNDVR 124


>SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5)
          Length = 298

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -2

Query: 76  CGCC--CKNCATNNYP 35
           CG C  C NC+ NN P
Sbjct: 112 CGLCQNCANCSNNNVP 127


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 82  LKPTTLHDGNIKKIG--LRKYHICSQADVQRKYAWRARSQVL 201
           + P  +H   I  +G   R+Y+ C     +   +W++ +QVL
Sbjct: 14  ITPLEIHSPGITALGNLQRRYYPCGNPQPRNYPSWKSTAQVL 55


>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 133 FVNRFF*CYHRVTLSA*EVCGCCCKNCATNNY 38
           F +R   CY  V  +  E C C C+     NY
Sbjct: 776 FASRHSTCYESVPCATNEECECPCRKRLEYNY 807


>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 95  RYTMVTLKKSVYENITYVRKLMCKEN 172
           RY+ VT+ K  Y N+T ++ L   +N
Sbjct: 201 RYSHVTMMKDRYSNVTMMKDLSTFQN 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,642,744
Number of Sequences: 59808
Number of extensions: 111077
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)