Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i14
         (260 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48385.1 68418.m05980 expressed protein                             27   2.3  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    25   5.2  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    25   5.2  
At3g52115.1 68416.m05720 hypothetical protein                          25   6.9  
At3g12780.1 68416.m01596 phosphoglycerate kinase, putative simil...    25   9.1  
At1g56190.1 68414.m06458 phosphoglycerate kinase, putative simil...    25   9.1  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    25   9.1  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    25   9.1  

>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 22  LCCTMDNYSLHNFYNNNRKPL 84
           LC  MD+  LH F ++NRK L
Sbjct: 178 LCGDMDSTGLHKFVSDNRKNL 198


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 76  CGCCCKNCATNNYP*CSTGNITD 8
           C C  K+ +T N+P  +T + TD
Sbjct: 401 CHCAVKSTSTENHPPSNTSHTTD 423


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  SLHNFYNNNRKPLKPTTLHDGNIKKIGLR 132
           +L+  YN + + + P T+H G+ +  GLR
Sbjct: 128 NLNAEYNEHLEDMNPVTVHPGHFEVNGLR 156


>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 86  SRQRYTMVTLKKSVYENITYVRKLMCKENMPG---EHDHKFYN 205
           SRQR  +    K  ++++  VRK   +EN+ G   +   KFY+
Sbjct: 499 SRQRIQIAETSKKSFKHVESVRKKAERENLKGIECKQCKKFYD 541


>At3g12780.1 68416.m01596 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 481

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 166 FAHQLANICDIFVNRFF*CYHRVTLS 89
           FA +LA++ D++VN  F   HR   S
Sbjct: 209 FAKKLASLADLYVNDAFGTAHRAHAS 234


>At1g56190.1 68414.m06458 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 478

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 166 FAHQLANICDIFVNRFF*CYHRVTLS 89
           FA +LA++ D++VN  F   HR   S
Sbjct: 206 FAKKLASLADLYVNDAFGTAHRAHAS 231


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 143 YVRKLMCKENMPGEHDHK 196
           YV+ ++   N+PGE +HK
Sbjct: 191 YVKVILSDSNVPGEGEHK 208


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1218

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 22  LCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKIGLRKYHIC-SQADVQRKYAWRA 186
           LC   D+        N +  L PTT H     + GLR   +   + D +   AW A
Sbjct: 623 LCKGADSIIFERLAKNGKVYLGPTTKHLNEYGEAGLRTLALSYRKLDEEEYSAWNA 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,371,033
Number of Sequences: 28952
Number of extensions: 69347
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)