Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i13
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    28   1.9  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   5.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   7.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   7.6  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   7.6  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 689 LNNLFASYTLNRTDVMELYNIKYAIDPTNKIVIEQ 585
           L  +F   T +  D M  YN K + DPT+ ++ ++
Sbjct: 76  LYGMFLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 236 FRQHDETSSQPKLAFRRQKLEIQCAV 313
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 115 CNCRTIKLNGMRSSKKIKRQ 56
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 312 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 416
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 641 ELYNIKYAIDPTNKIVIEQV 582
           +LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 298 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 477
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 478 IIELTTP 498
            +E  TP
Sbjct: 70  YVEPATP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,525
Number of Sequences: 5004
Number of extensions: 72104
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)