Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i13
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59270.1 68416.m06607 syntaxin-related family protein contain...    31   1.3  
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    29   3.8  
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P...    29   3.8  
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co...    28   8.9  

>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 303 WISNFCRRKASFGCDDVSSCWRKRMAATGDG 211
           WI+N  +R+ S    D+SSCW   M+   DG
Sbjct: 62  WITNVLKRRVSELALDISSCWDWPMSTAIDG 92


>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 239 ENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMS 129
           EN   +PV   Q ASR +G   V +  +VEK  PN S
Sbjct: 700 ENMTSIPVQPHQTASRGAGKSHVSSSAKVEKQTPNQS 736


>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 997

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 239 ENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMS 129
           EN   +PV   Q ASR +G   V +  +VEK  PN S
Sbjct: 697 ENMTSIPVQPHQTASRGAGKSHVSSSAKVEKQTPNQS 733


>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
           contains Pfam profile PF04885: Stigma-specific protein,
           Stig1
          Length = 121

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 615 RSNK*NCNRASRQCGRICAYPRTGSRSVRR 526
           R+NK NC R    CG+ C Y     RS R+
Sbjct: 75  RTNKLNCGR----CGKSCQYSEVALRSARK 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,386
Number of Sequences: 28952
Number of extensions: 367165
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)