Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i09
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0273 - 2048527-2049297 30 2.2
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 29 2.9
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787... 29 3.8
12_01_0282 - 2088302-2089081 28 6.6
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 6.6
07_01_1079 + 9770444-9772756 28 8.8
>11_01_0273 - 2048527-2049297
Length = 256
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +2
Query: 284 PNAAVSRLASACRSLSPSARA------WQNTYSALYNVHSSAKRLLTNFSLPI 424
P+ + LAS CRS P+ARA T+ +H+++ L++F++P+
Sbjct: 104 PSPGAADLASWCRSTPPAARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPV 156
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 644 VLRNEDIMWHIFWRFFLIIFWNHTGNSGRS 733
+L N ++W WR F+I WNH+ S R+
Sbjct: 566 LLENSALLWG--WRMFMIKLWNHSLLSART 593
>09_02_0363 -
7871730-7871853,7871986-7872075,7872720-7872799,
7872881-7872964,7874944-7874992,7875114-7875240,
7875798-7875934,7876004-7876050,7876126-7876185,
7876810-7876862,7878205-7878269,7879050-7879174,
7879307-7879366,7879670-7879806,7880737-7880805,
7880889-7881045,7881121-7881235,7881855-7881916
Length = 546
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 644 VLRNEDIMWHIFWRFFLIIFWNHT 715
+++N ++W WRFF++ WNH+
Sbjct: 498 LVQNPALLW--CWRFFMVKLWNHS 519
>12_01_0282 - 2088302-2089081
Length = 259
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +2
Query: 284 PNAAVSRLASACRSLSPSARA------WQNTYSALYNVHSSAKRLLTNFSLPI 424
P+ + LAS CRS P ARA T+ +H+++ L++F++P+
Sbjct: 105 PSPDAADLASWCRSTPPPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPV 157
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 324 DRQALASLLTAAFGPRVIVYENSRRFEFINPDEIASGKRLIIKHL 190
DR+ L A G V + S + NP+E+ SG+R I K L
Sbjct: 1675 DREGTKDELRLAIGKSATVRDTSSADGYDNPNELDSGERRIQKDL 1719
>07_01_1079 + 9770444-9772756
Length = 770
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 438 TIRTIIGNEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLL 298
T I NE + R L L + A YVFC++ GD+ A LL
Sbjct: 103 TAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,562
Number of Sequences: 37544
Number of extensions: 324408
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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