Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i09
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42672| Best HMM Match : DUF755 (HMM E-Value=8.1) 32 0.42
SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 29 2.9
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5) 29 2.9
SB_12918| Best HMM Match : Adeno_E3A (HMM E-Value=8.6) 29 3.9
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_36543| Best HMM Match : Filo_VP24 (HMM E-Value=6.7) 28 9.0
SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2) 28 9.0
>SB_42672| Best HMM Match : DUF755 (HMM E-Value=8.1)
Length = 159
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 433 SHNYWQRKVCKETFGRAVHIVQRRVRVLPGT 341
+H+Y++R C+E F R H++ VLPGT
Sbjct: 19 NHHYFRRTACRELFCRRNHLIPFGWPVLPGT 49
>SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 370 VQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFT 489
+QC +L P+K+ ++ CA C V +P ++R+T
Sbjct: 473 IQCPRLDCPKPFKMHPSDCCAQCPVCKFGQNTYPNNARWT 512
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -2
Query: 417 NEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSR 253
N V+ R AEL LYN +Y R+ GD Q A +A G V I +E+ +
Sbjct: 725 NNVDVKVRSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYK 783
Query: 252 RFEFINPDEIA 220
RF + +EIA
Sbjct: 784 RFHGMTKEEIA 794
>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
Length = 632
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -2
Query: 417 NEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSR 253
N V+ R AEL LYN +Y R+ GD Q A +A G V I +E+ +
Sbjct: 252 NNVDVKVRSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYK 310
Query: 252 RFEFINPDEIA 220
RF + +EIA
Sbjct: 311 RFHGMTKEEIA 321
>SB_12918| Best HMM Match : Adeno_E3A (HMM E-Value=8.6)
Length = 214
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -2
Query: 405 VRRRLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEF 241
V+ R AEL LYN +Y R+ GD Q A +A G V I +E+ +RF
Sbjct: 130 VKVRSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHG 188
Query: 240 INPDEIA 220
+ +EIA
Sbjct: 189 MTKEEIA 195
>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1298
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +1
Query: 7 LSNPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG---VNITL 177
L N S + N L+ NG ++ K + +IK+ ++ +S + S ++IG +N+ +
Sbjct: 234 LQNVSFVSNMLS-TNGLIYVNLKGVLCNIKIDKVLFTKSKHIARSGIVRIIGPNQLNVLI 292
Query: 178 RFILQMFN 201
I+ M N
Sbjct: 293 TNIISMSN 300
>SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 215 PLAISSGFINSNRRLFS*TMTRGPNAAVS-RLASACR 322
P+AI FI R LFS T+ R P A S S CR
Sbjct: 36 PIAIVQNFIIKFRELFSATLLRRPRACRSLSYVSTCR 72
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -3
Query: 188 KMNLKVILTPINLKGEEEPNCVERITIMPCSLMDTEICLNVRCRSPFAKFKVLII----V 21
K+N +I + + EEE + + + ++ C L+ T+I L SP F + V
Sbjct: 1302 KINASIIQSVFEMMSEEELSFLRKGKLVSCKLLATDIPL---ASSPIVLFSTTAMFISHV 1358
Query: 20 DGFDSA 3
D FDS+
Sbjct: 1359 DSFDSS 1364
>SB_36543| Best HMM Match : Filo_VP24 (HMM E-Value=6.7)
Length = 298
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -2
Query: 396 RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 232
R AEL LYN +Y R+ GD Q A +A G V I +E+ +RF +
Sbjct: 172 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 230
Query: 231 DEIA 220
+EIA
Sbjct: 231 EEIA 234
>SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)
Length = 353
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -2
Query: 396 RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 232
R AEL LYN +Y R+ GD Q A +A G V I +E+ +RF +
Sbjct: 2 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 60
Query: 231 DEIA 220
+EIA
Sbjct: 61 EEIA 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,628
Number of Sequences: 59808
Number of extensions: 396200
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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