Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i09
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    29   3.2  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    29   3.2  
At3g18180.1 68416.m02313 hypothetical protein contains Pfam doma...    28   5.6  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    27   9.7  

>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +2

Query: 221 AISSGFINSNRRLFS*TMTRGPNAAVSRLASACRSLSPSARAWQNTYSALYNVHSSAKRL 400
           +ISS F  S R      +T  P    S +  A R  SPS + W    SA     SS  R+
Sbjct: 355 SISSKFSQSKRFSSDSPLTSSPRGMTSPIRGATRPASPS-KLWATATSAPARTSSSPSRV 413

Query: 401 LTNFS 415
               S
Sbjct: 414 RNGVS 418


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +2

Query: 221 AISSGFINSNRRLFS*TMTRGPNAAVSRLASACRSLSPSARAWQNTYSALYNVHSSAKRL 400
           +ISS F  S R      +T  P    S +  A R  SPS + W    SA     SS  R+
Sbjct: 355 SISSKFSQSKRFSSDSPLTSSPRGMTSPIRGATRPASPS-KLWATATSAPARTSSSPSRV 413

Query: 401 LTNFS 415
               S
Sbjct: 414 RNGVS 418


>At3g18180.1 68416.m02313 hypothetical protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 470

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 306 SLLTAAFGPRVIVYENSRRFEFINPDEIASGKRLI-IKHLQDESQSDINAY 157
           S +T    PR+++   SR   F+N  EIA   R I  K +  E+ ++I ++
Sbjct: 292 SAVTTRRKPRILILSRSRSRAFVNAGEIARAARQIGFKVVVAEANTEIASF 342


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 GPNAAVSRLASACRSLSPSARAWQNTYSAL 370
           G N  +S+  S  R++  SAR WQ T S L
Sbjct: 309 GVNGEISKSKSLPRNIMASARFWQETNSRL 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,258
Number of Sequences: 28952
Number of extensions: 270870
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)