Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i08
         (143 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   2.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.4  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    19   7.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    18   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 369 VCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 389 VCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 118 VCVCFIY 98
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 4/11 (36%), Positives = 8/11 (72%)
 Frame = -2

Query: 118 VCVCFIYHIKW 86
           + +CF+Y + W
Sbjct: 277 ITICFLYVLSW 287


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 24  DTKINYHF 1
           D +INYHF
Sbjct: 223 DQRINYHF 230


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 101 LSHKMXVXQKSQPI 60
           + HKM    KS+PI
Sbjct: 248 IDHKMLTPIKSEPI 261


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -2

Query: 142 FXFLLFXRVCVCFIY 98
           F F L   +C  F Y
Sbjct: 6   FIFALLATICAAFAY 20


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 118 VCVCFIYHIKWXSGK 74
           +C  F Y   W +GK
Sbjct: 20  MCQTFTYSHGWTNGK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,304
Number of Sequences: 438
Number of extensions: 257
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used:  2547501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)