Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i07
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 2.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 2.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 3.5
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 24 4.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 4.6
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 4.6
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 24 6.1
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 24 6.1
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 23 8.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 8.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 23 8.1
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 2.0
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 7 IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTAD 186
I N N R + N+QE I + C S + E T CA+ + ++ V
Sbjct: 176 IVNFTSNPNRYRFYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235
Query: 187 IQID 198
IQ+D
Sbjct: 236 IQLD 239
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 281 SILYLYISKCLSSIIANAAERTPHCTFASICMSA 180
SI+ +Y KC+ + I+ A C F ++ +SA
Sbjct: 2777 SIIAVYFDKCIEAFISMLAILKAGCCFLALDVSA 2810
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 3.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 177 HRRHTNRRKGAMRRAFG 227
H RH ++KG +R FG
Sbjct: 503 HHRHHKKKKGGNKRVFG 519
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 24.2 bits (50), Expect = 4.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 196 RFVCRRC--TCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRS 53
+++C+RC K Y +LL+ + LP++ SLT + G S
Sbjct: 2 QYLCQRCHSLINFKDVYDD---DLLKLKNLPKSRFVQASSLTEMNESGES 48
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = -2
Query: 190 VCRRCTCERKQSYQSL----PAELLR 125
+CR+C QSYQ L PA LL+
Sbjct: 293 ICRKCVITILQSYQQLIVDQPANLLK 318
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 4.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 298 NKKIYSLFYTCTFPNV 251
NK + F TC FPNV
Sbjct: 16 NKNVLVTFVTCGFPNV 31
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -3
Query: 252 FIVNYCKRGRTHAALHLCVDLYVGGVHV 169
+++N C + LC D+YV V +
Sbjct: 225 YMLNKCSAENKFVVIELCEDIYVDTVQI 252
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 295 KKIYSLFYTCTFPNVY 248
K+++ L +TCTF +VY
Sbjct: 489 KRLFELPFTCTFIDVY 504
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVI 151
L+ ++FI+ CK + + LC+ G H+ E + I
Sbjct: 80 LISIEVFIIGICKHKFHSSTVFLCL-----GTHIMEGQYI 114
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.4 bits (48), Expect = 8.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -3
Query: 255 MFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 109
+F++ + LH+ D+Y G + ++ I H C GR L
Sbjct: 1080 LFMITRGGVSKAQKGLHVNEDIYAGMIALQRGGRIKHCDYYQCGKGRDL 1128
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.4 bits (48), Expect = 8.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 109 EATSACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGVRS 225
+A A E +Q + D + F D+Q D K Q VRS
Sbjct: 214 DAQKAKEETKQKLQDLYEEFKSVAVDLQGDPKYQHPVRS 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,958
Number of Sequences: 5004
Number of extensions: 24324
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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