Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i07
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         31   0.19 
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)                  29   0.58 
SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)                   29   1.0  
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)          28   1.3  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          28   1.8  
SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)              28   1.8  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   4.1  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  27   4.1  
SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)         26   5.4  
SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)                       26   5.4  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               26   7.2  
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)          26   7.2  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           25   9.5  
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)              25   9.5  
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)              25   9.5  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  25   9.5  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                25   9.5  

>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQ 149
           K Y + +TC     +Y ++  +      I  LRRF+CRR      +SYQ
Sbjct: 724 KRYGVLFTCMASRAIYLEVAHSLETDWYINALRRFICRRGPVREMRSYQ 772


>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
          Length = 580

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -3

Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL 136
           VIKK +   + V  + F++N  K    + +     D+ +     KEN ++  Y+L
Sbjct: 378 VIKKAVRRQLHVLDETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVL 432


>SB_45396| Best HMM Match : DUF1491 (HMM E-Value=4.1)
          Length = 88

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 262 FPNVYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLR 125
           F  VY+      P A ++ P++++ C   TC   Q  Q+    L++
Sbjct: 26  FGTVYKATWAGTPVAVKVIPIKKYTCAPQTCRTAQEEQATLVALIK 71


>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
          Length = 326

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 253 VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTS 74
           +YR   + RPN  +  P RR      TC +K+   +L      +++L +T      SL +
Sbjct: 142 LYRSSFE-RPNGSKRLPYRRCFVNFMTCNQKRKTVTLAISSQWRKSLKKTKSPRYQSLKT 200

Query: 73  LYF 65
             F
Sbjct: 201 TMF 203


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  VQENIMTSNCASSPYSCEATSAC 126
           +QE+I+   CA   ++CE T+ C
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKC 914


>SB_8593| Best HMM Match : Defensin_beta (HMM E-Value=6.2)
          Length = 87

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 113 QRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRPRLQ 238
           +R + Q  +R    T  S TC+PPT      CN  C    +Q
Sbjct: 7   KREIEQANARPLACTAESQTCSPPTKSIGSECNTECAEADVQ 48


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 82   NCASSPYSCEATSAC 126
            NC  S YSC +TS C
Sbjct: 2413 NCTQSEYSCRSTSRC 2427


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 170 TCTPPTYKSTQRCNAACVRP 229
           TC PP+   T  CNA CV P
Sbjct: 345 TCVPPSV--TPECNATCVGP 362


>SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 109 EATSACAEAQQVMIDNFVFFHMYTADIQID 198
           E  S CAE  Q ++DN +  H++  ++ ++
Sbjct: 352 EIDSMCAELSQWLLDNNIVEHLFGPNLHVE 381


>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
          Length = 1043

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 292 KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQ 149
           K Y + +TC     V+ ++         I  LRRF+CRR    + +S Q
Sbjct: 747 KRYGVLFTCLASRAVHIEIAHNLETDSYINALRRFICRRGPIRQMRSDQ 795


>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
          Length = 501

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 22  RNMIRTSSHVLNVQENIMTSNCASSPYSCEATSA 123
           R++++TS H L    N +   C SS +S ++ ++
Sbjct: 321 RSVVKTSKHELTEDGNFVRYTCPSSTWSSDSENS 354


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 16   EQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSA 123
            +Q+N +R  SH  N + +I  S   SSP+  +  +A
Sbjct: 1436 QQQNKMRPQSHQRNSRNSINLSKLRSSPHQKDPKNA 1471


>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
          Length = 133

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 58  VQENIMTSNCASSPYSCEATSAC 126
           +QE+ +   CA   ++CE T+ C
Sbjct: 79  LQESTVKGGCAEGQFACEKTNKC 101


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 292  KIYSLFYTCTFPNVYRQLLQTR 227
            +IYS F  C FP VY+++LQ +
Sbjct: 2318 EIYS-FLCCFFPKVYKRVLQNQ 2338


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 292  KIYSLFYTCTFPN-VYRQLLQTRPNARRIAPLRRFVCRR 179
            K Y + +TC     ++ ++  +      I  LRRF+CRR
Sbjct: 1359 KRYGVLFTCMASRAIHLEVAHSLETDSYINALRRFICRR 1397


>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
          Length = 604

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 287 LFSILYLYISKCLSSIIANAAERTPHC 207
           + + L+ Y   CL S++ ++ ERT  C
Sbjct: 29  VLACLHTYCRHCLESLVEHSQERTVSC 55


>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
          Length = 462

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 287 LFSILYLYISKCLSSIIANAAERTPHC 207
           + + L+ Y   CL S++ ++ ERT  C
Sbjct: 29  VLACLHTYCRHCLESLVEHSQERTVSC 55


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = -2

Query: 190 VCRRCTCERKQSYQSLPAELLRKRTLP----RTNMAMTHSLT--SLYFPGRSARDCW 38
           VC+RC   +++  ++L   LL+ +T      +T + +THS +  +L +  R   + W
Sbjct: 128 VCKRCFSSKEKCRKNLALVLLKSQTEQMSHVKTPLGITHSRSTRALQYLSRDMSNVW 184


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 4   VIDNEQRNMIRTSSHVLNVQENIMTSNCASS-PYSCEATSACAEAQQVMIDN 156
           VI+N+Q    +  +H     ++ +TSN   + P  C++ S+  +    +IDN
Sbjct: 534 VINNKQTIQKQELNHGPEDDDSNITSNGLGTWPLGCDSESSSTKENNALIDN 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,005
Number of Sequences: 59808
Number of extensions: 195747
Number of successful extensions: 555
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)