Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i07
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    29   0.90 
Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    26   4.8  
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    26   6.4  
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    26   6.4  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical p...    25   8.4  
AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical ...    25   8.4  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    25   8.4  
AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical ...    25   8.4  
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    25   8.4  

>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 130 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 32
           L+K   P+TN  M H L +    G+S++ C F+
Sbjct: 21  LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53


>Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical
           protein F43G6.3 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 119 DVASHEYGDDAQFDVIIFS 63
           D++ +E GDDA FDV+I S
Sbjct: 11  DLSDNELGDDASFDVLISS 29


>U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical
           protein T19H12.2 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 119 DVASHEYGDDAQFDVII 69
           D++ +E GDDA FDV+I
Sbjct: 66  DLSDNELGDDASFDVLI 82


>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 77  RQTVRHRHIRARQRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRP 229
           R +V +  I+   RP+  K  +   + +FS +  P  Y+S Q  +  C+ P
Sbjct: 350 RPSVFYDSIKCTMRPICSKYDQD--LVIFSMSHDPIVYRSGQTSDIRCLPP 398


>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 118 TLPRTNMAMTHSLTSLYFP-GRSARDCWFLSCCVARYQS 5
           T P  N A +  L S++FP   S RD  FLS   +R+QS
Sbjct: 313 TRPLLNFARS-KLHSIFFPRNMSIRDVSFLSSSQSRHQS 350


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 7   IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVM 147
           ID EQ   I   SH L V     T  C    Y CE  S+  EAQ+ M
Sbjct: 217 IDVEQNTSI---SHCLRVFSETETL-CGDQKYFCETCSSKQEAQKRM 259


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 7   IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVM 147
           ID EQ   I   SH L V     T  C    Y CE  S+  EAQ+ M
Sbjct: 229 IDVEQNTSI---SHCLRVFSETETL-CGDQKYFCETCSSKQEAQKRM 271


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 46  HVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYT-ADIQIDA-KVQCGV 219
           ++++  ++++  N     Y     + CA A  ++I   VF++ YT   + +DA + + G 
Sbjct: 27  YLIHSSKHVLFGNYRYLSYFFAIFNLCASAADLLIPVAVFYYRYTFVTLVVDAMRSEQGE 86

Query: 220 RSAAF 234
            S AF
Sbjct: 87  ASIAF 91


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 538 CRHCFCENKQEFCSL 552


>Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 538 CRHCFCENKQEFCSL 552


>Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 CRRCTCERKQSYQSL 143
           CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +1

Query: 4   VIDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSAC-----AEAQQVMIDNFVFF 168
           V+DNE++  + T    L      +TS  A +P  C   +        +  + + D  V+F
Sbjct: 257 VVDNEEKYGLPTKLIALLT----ITSFLADTPLGCIGIAKAFIQQGTKLMRFLTDLIVYF 312

Query: 169 HMYTADIQIDAKVQCGVRSAAFAIIDDKHLEMYK 270
           ++ T  + I   V C + S+ + I   K L + K
Sbjct: 313 NILTTAMTIFHPVMCLLMSSQYRITARKLLRIKK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,478,762
Number of Sequences: 27780
Number of extensions: 145926
Number of successful extensions: 493
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)