Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i07
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   6.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   6.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 261 FQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 109
           F+  + +YC    TH    +   + V   +V+E+  +   LL+F     CL
Sbjct: 354 FRSALEDYCNIVATHLVCGILGSILVPFFYVQEDDDVKLVLLNFGWQMICL 404


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 RTNMAMTHSLTSLYFP 62
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 RTNMAMTHSLTSLYFP 62
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 310 FFFSNKKIYSLFYTCTFP 257
           F    KK+Y+L Y    P
Sbjct: 33  FLLKQKKVYNLLYRVAQP 50


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 310 FFFSNKKIYSLFYTCTFP 257
           F    KK+Y+L Y    P
Sbjct: 33  FLLKQKKVYNLLYRVAQP 50


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 24 QHDKNQQSRAE 56
          QH KN+Q R E
Sbjct: 58 QHSKNEQQRKE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,958
Number of Sequences: 438
Number of extensions: 1586
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)