Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i07
(311 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containi... 29 0.50
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain... 27 2.0
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi... 27 2.6
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami... 27 3.5
At1g26140.1 68414.m03191 hypothetical protein 27 3.5
At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi... 26 4.6
At1g08610.1 68414.m00954 pentatricopeptide (PPR) repeat-containi... 26 4.6
At4g04800.1 68417.m00702 methionine sulfoxide reductase domain-c... 26 6.1
At5g01450.1 68418.m00058 expressed protein 25 8.1
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 25 8.1
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 25 8.1
At1g27910.1 68414.m03420 U-box domain-containing protein contain... 25 8.1
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 25 8.1
>At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 29.5 bits (63), Expect = 0.50
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL-SFCASGR 115
LV + + + +CK GRT A+ L +L G K N V + LL C GR
Sbjct: 246 LVSYNVLLTGFCKEGRTDDAMALFRELPAKG--FKANVVSYNILLRCLCCDGR 296
>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 1322
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 49 VLNVQENIMTSNCASSPYSCEATSA-CAEAQQVMIDN---FVFFHMYTADIQIDAKVQCG 216
VL + E++MT AS C S C +++++ FV FH +++D +
Sbjct: 1118 VLEIYESVMT---ASQTTICTFGSVICETLEELLLLRYWLFVSFHFSLCGMRMDCVDEIH 1174
Query: 217 VRSAAFAIIDDKHLEMYKYRIENKF 291
+ +F+IID+ + E + Y + +F
Sbjct: 1175 LVFTSFSIIDEDY-EGFDYCLSGQF 1198
>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 903
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLL 136
V + +FI ++CK+G+ +A + D+ G H K + N +L
Sbjct: 560 VAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH-KSLETYNSLIL 602
>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
protein (FBX1) E3 ubiquitin ligase SCF complex F-box
subunit; almost identical to unusual floral organs
(UFO)GI:4376159 from [Arabidopsis thaliana]
Landsberg-erecta; one amino acid difference
Length = 442
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 295 KKIYSLFYTCTFPNVYRQLLQTRPN 221
K+ YSL ++ TF Y QLL R N
Sbjct: 75 KRFYSLLFSNTFLETYLQLLPLRHN 99
>At1g26140.1 68414.m03191 hypothetical protein
Length = 162
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 49 VLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFF 168
V+ V +M +C + C S C + + + F+FF
Sbjct: 37 VIFVHIRVMEEDCGAFAADCVVLSCCCQCLVLQVSVFIFF 76
>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 686
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 115
LV + + +YC+RGR A +L +Y V V + + C GR
Sbjct: 310 LVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRV-VPDLVTYTSLIKGLCKDGR 360
>At1g08610.1 68414.m00954 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 559
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGG 178
+ + M I N CK+G AL L D+ + G
Sbjct: 175 ITYNMIIGNLCKKGHIRTALVLLEDMSLSG 204
>At4g04800.1 68417.m00702 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 176
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 173 CTPPTYKSTQRCNAACVRP 229
C P YKST + NA C P
Sbjct: 93 CNAPLYKSTTKFNAGCGWP 111
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Frame = -2
Query: 49 RDCWFLSC--CVARYQ 8
RDC+FLSC CVA +Q
Sbjct: 401 RDCFFLSCGHCVACFQ 416
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = -2
Query: 202 LRRFVCRRCT--CERKQSYQSLPAEL----LRKRTLPRTNMAMTHSLTSLYFPGRSARD 44
L +FV T CE K + A + L + + ++T L ++FPG+SA D
Sbjct: 87 LSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQRYKEFSASLTQGLLKVFFPGKSAED 145
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 184 RRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFLSCC 23
RR ER SY P+ R+ PR + + + PG ARDC +S C
Sbjct: 27 RRMRSERV-SYHDAPS---RREREPRRAFSQGNLCNNCKRPGHFARDCSNVSVC 76
>At1g27910.1 68414.m03420 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 768
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 217 RRIAPLRRFVCRRCTCERKQSYQSLPAELLR 125
R+++ L F R C R+ S S+P E LR
Sbjct: 254 RQLSKLSSFNFRSCNNNRRSSQMSVPPEELR 284
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 304 FSNKKIYSLFYTCTFPNVYRQLLQTRPNARRIAPLRRFV 188
F N +IYS +T T P V + +Q+ P R A + V
Sbjct: 291 FFNPEIYSNDFTTTLPAVIDKCIQSAPIDTRRALYKNIV 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,704,977
Number of Sequences: 28952
Number of extensions: 122246
Number of successful extensions: 427
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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