Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A0V1 Cluster: Putative permease; n=1; Staphylococcus ...    33   5.6  
UniRef50_A5E090 Cluster: Putative uncharacterized protein; n=1; ...    32   7.3  

>UniRef50_Q4A0V1 Cluster: Putative permease; n=1; Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305|Rep:
           Putative permease - Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 /DSM 20229)
          Length = 307

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 357 GTPLSISSWVAL*YSFECFMTSELLVYFHSFFYLRKLRALRGYFSLPVLPAL 202
           G PL++S  V +  S +   T    V+     ++ KL+AL GYF +PVL AL
Sbjct: 121 GDPLAMSVQVIV-LSLQNIFTFSYGVFAIQSLHIGKLKALLGYFKMPVLYAL 171


>UniRef50_A5E090 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 709

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 298 DERTTRIFPLFFLPT*--TESPERLFQPTSPTSTPLPVFSLRVATLSM-KQLSKRVLFFC 128
           D   TR+  +  LP+   T S      P  PTS+P  V  L V  L+   Q  K ++FF 
Sbjct: 172 DISRTRLDAVSLLPSTSSTSSSSSSHSPHLPTSSPQHVDDLSVYVLAKCPQCKKDIIFFM 231

Query: 127 FLPKLIALRGFF 92
              KL+AL+  F
Sbjct: 232 KRSKLVALQASF 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,330,151
Number of Sequences: 1657284
Number of extensions: 9139930
Number of successful extensions: 19782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19771
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)