Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    24   0.74 
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    23   1.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.2  

>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 150 DNCFILNVATRRLKT 194
           +NC +LNV T+ L+T
Sbjct: 53  ENCLVLNVYTKNLRT 67


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 129 QKKSTLFDNCFILNVATRRL 188
           ++K T  +NC +LNV TR +
Sbjct: 45  RQKITGSENCLVLNVYTRNI 64


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 291 ELLVYFHSFFYLRKLRALRGYFSLPVLP-ALHYQSSVY 181
           ELL  FH   Y+  +     Y+ +P+ P +  Y + +Y
Sbjct: 380 ELLRRFHEIRYMSTIDLRSSYWQIPLSPESRQYTAFLY 417


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 KHSKEYYNATQLDIDKGVPLWFR*SDDV 385
           K  KE Y   + +++K  P+W R +DD+
Sbjct: 267 KTIKEKYTEDE-ELNKTKPIWTRNADDI 293


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 220 TSPTSTPLPVFSLRVATLSMKQLSKR-VLFFC 128
           T P  T  P FS  +  L  ++ SK+ V   C
Sbjct: 223 TEPVGTKAPAFSTDIKVLGYQRHSKQNVALLC 254


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 259 PT*TESPERLFQP-TSPTSTPLPVF 188
           PT ++SP +++QP T+ T+   P +
Sbjct: 340 PTPSQSPNQIYQPVTNLTNLTYPSY 364


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 217 SPTSTPLPVFSLRVATLSMKQLSKRVLFFC 128
           SP+STP  + + R +T +    S+ V+  C
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRSVMTSC 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,238
Number of Sequences: 336
Number of extensions: 2396
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)