Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0186 - 15582925-15584334                                         28   4.1  
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225...    27   9.6  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    27   9.6  

>10_08_0186 - 15582925-15584334
          Length = 469

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 265 FLPT*TESPERLFQPTSPTSTPLP 194
           F P  T  P++L+QP  P  +PLP
Sbjct: 68  FTPPPTAPPDQLYQPFHPPPSPLP 91


>08_01_1036 +
           10520727-10521117,10521301-10521479,10521603-10522593,
           10522613-10522656
          Length = 534

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -2

Query: 226 QPTSPTSTPLP 194
           QPT+PTSTPLP
Sbjct: 170 QPTTPTSTPLP 180


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 360 SGTPLSISSWVAL*YSFECFMTSELLVYFHSFFYLRKLRALRGYFSLPVLPALHYQSSVY 181
           +G P      V L   + CF +   LVY+ S  Y+  +RA +G+  +P L  L   + ++
Sbjct: 459 AGCPTGCVPPVPLAADYGCFHSVSQLVYYTSCLYILLVRARQGH--IPYLYGLWRNAQLF 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,952
Number of Sequences: 37544
Number of extensions: 243234
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)