Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)               29   3.2  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        28   4.2  

>SB_22884| Best HMM Match : Tctex-1 (HMM E-Value=9.4e-26)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 VRSS*NIQRNITMPPNSISIKGCRSGSGSQ 377
           V+ S N  RN+  PPNS    G R GS ++
Sbjct: 397 VKGSANSNRNVPSPPNSAKSHGPRPGSSTR 426


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 383 VVFVTIRALNLRYFKVNLFCVWKLATSCSGCP*TYILLKLKHLIN 517
           VVF T++A +   F   ++C  K   +C      Y  LK KH  N
Sbjct: 85  VVFCTLKAKHTCNFVSVVYCTLKTKHTCDFVSVLYCTLKAKHTCN 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,035
Number of Sequences: 59808
Number of extensions: 284209
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)