Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   5.0  
EF426178-1|ABO26421.1|  155|Anopheles gambiae unknown protein.         23   8.7  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   8.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.7  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 184 LRVAT-LSMKQLSKRVLFFCFLPKLIALRGFF 92
           LR AT L +  L+    FF  LP +I   G+F
Sbjct: 290 LRYATNLHVSPLTPNTFFFYMLPPIILDAGYF 321


>EF426178-1|ABO26421.1|  155|Anopheles gambiae unknown protein.
          Length = 155

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 432 FTLKYRRFRALIVTNTTSSDYRNQSGTPLSISSWVAL*YSFECFMTSELLVYFHSFF 262
           F   Y  F AL    + S+    Q  +P S S   A   S EC   S++ +  HS F
Sbjct: 9   FLAAYLFFGALFA-QSVSALRCYQCASPSSWSDCQASAQSVECTSASQMSIMGHSLF 64


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 107 GYQLRQETKKKYSFRQLF 160
           G Q ++ TKKK + +QLF
Sbjct: 735 GQQQKRATKKKTTIKQLF 752


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 22  ARVRVSNVVRFEPREL 69
           AR+ V+N+ +FE REL
Sbjct: 794 ARIGVANIRQFEEREL 809


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,774
Number of Sequences: 2352
Number of extensions: 9574
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)