Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    27   6.5  

>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 411 FRALIVTN-TTSSDYRNQSGTPLSISSWVAL*YSFECFMTSELLV-YFHSFFYLRKL-RA 241
           F+ +I  N +T+  ++ +SG P S   W A+  S  C  T  +   Y H F   + L R 
Sbjct: 11  FQKIIFENFSTTEIFQKKSGKPESKLYWEAVHQSSSCPQTLSIFTNYLHIFPINQHLARQ 70

Query: 240 LRGYFSLP 217
           +  Y+S P
Sbjct: 71  VASYYSYP 78


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 50  GLSPVSSPTS*GYAEKTSQGYQLRQETKKKYSFRQLFHT 166
           G SP S PTS  Y +  +Q YQ  Q++    S  Q FH+
Sbjct: 204 GESPSSFPTSFTYTQPETQSYQPSQQSSASSSNLQ-FHS 241


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 411 FRALIVTNTTSSDYRNQSGTPLSISSWVAL*YSFECFMTSELLVYF---HSFFYLRKLRA 241
           F A + T+    D   +S T   I +WV + ++F C+    L+ +F   ++  + ++LR 
Sbjct: 240 FFASLCTSMLHVDEWTESQT---IRNWVYMAFNFSCWSYGTLVPFFMLAYNPLWQKELRR 296

Query: 240 LRGYFSLPVLPA 205
           L G F   + PA
Sbjct: 297 LGGKFCCCLCPA 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,642
Number of Sequences: 27780
Number of extensions: 221818
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)