Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i04
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44490.1 68418.m05451 F-box family protein contains F-box dom...    30   1.1  
At5g11730.1 68418.m01370 expressed protein contains Pfam profile...    29   1.5  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   2.6  

>At5g44490.1 68418.m05451 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 309 ECFMTSELLVYF-HSFFYLRKLRALRGY---FSLPVLPALHYQSSVYA 178
           +C     L +Y   + FYLR  R L G     SLP L  +H + +VYA
Sbjct: 134 KCLEVMPLTLYITQTLFYLRLHRVLLGNVESISLPCLKTMHLEQNVYA 181


>At5g11730.1 68418.m01370 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 386

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -3

Query: 429 TLKYRRFRALIVTNTTSSDYRNQSGTPLSISSWVAL*YSFECFMTSELLVYFHSFFYLRK 250
           T+KY   ++ +VT  TSS    + G P S+S W+         M+ E L++  SF+  RK
Sbjct: 51  TIKYTGIQS-VVTTVTSSFVPCREGEPNSLSKWIQPPAVLMHNMSDEELLWRASFWPRRK 109


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 250 TESPERLFQPT--SPTSTPLPVFSLRVATLSMKQLSK 146
           +E+ E LFQPT  SP S P PV ++ V T+   + S+
Sbjct: 292 SENVEPLFQPTNPSPKSEPEPVKTITVETIHSAERSE 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,279
Number of Sequences: 28952
Number of extensions: 204081
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)