Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i03
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 197 CEQVYPDKDFSLKLKR 244
           CE+ YPD  F++ L+R
Sbjct: 219 CEEPYPDIVFNITLRR 234


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 206 VYPDKDFSLKLKRVINMF 259
           V+P   FSL L +V+++F
Sbjct: 139 VHPSATFSLDLNKVVSVF 156


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 197 CEQVYPDKDFSLKLKR 244
           C++ YPD  F++ L+R
Sbjct: 218 CDEPYPDIFFNITLRR 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,745
Number of Sequences: 438
Number of extensions: 2190
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)