Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i03
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    29   1.6  
At4g08740.1 68417.m01442 hypothetical protein                          28   3.6  
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...    27   6.3  
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...    27   6.3  
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    27   6.3  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   8.3  
At4g27660.1 68417.m03978 expressed protein  ; expression support...    27   8.3  

>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/71 (25%), Positives = 40/71 (56%)
 Frame = +2

Query: 206 VYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 385
           V  D   ++  ++ I + L+D+ E++  Y+L    DSS+K+ R+  +    ++  + ++ 
Sbjct: 583 VVADSQQTVAGRKRIRVILSDD-ESETEYELGCPKDSSHKVLRQNEEVSEESMYFDGAIN 641

Query: 386 FTLHRFVDDNV 418
           +T +R + DNV
Sbjct: 642 YTDNRAIQDNV 652


>At4g08740.1 68417.m01442 hypothetical protein 
          Length = 213

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 120 KFFIKLDILTSTYYQSIELVFLFKIASSACSISN 19
           + F+   +L+S++  S +LVF+ K+ +S+C+ SN
Sbjct: 84  QLFLVNKLLSSSWTTSDQLVFVNKLINSSCTTSN 117


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 242 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 349
           +++ +FL+ +++ND  YKL   V    KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 242 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 349
           +++ +FL+ +++ND  YKL   V    KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIE 277
           +QV+PD   + K   V+NMF+ D  E
Sbjct: 160 KQVHPDLGITSKAMTVVNMFMGDMFE 185


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 194 LCEQVYPDKDFSLKLKRV---INMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 364
           LC Q +PD++F  +  +    +N +L+    N  +Y  V+  +  + L  ++     H L
Sbjct: 92  LCRQTHPDREFVEEANKAAIEMNDYLHHLNTNHTLYAAVKKAEQDSNLLTKEASRTAHHL 151


>At4g27660.1 68417.m03978 expressed protein  ; expression supported
           by MPSS
          Length = 208

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 412 VVHESMQCKCYT-DIV*QCMY 353
           +VHE  QC CY  D+V  C Y
Sbjct: 94  IVHEKGQCYCYVCDVVAPCAY 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,204
Number of Sequences: 28952
Number of extensions: 169526
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)