Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h23
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    29   3.6  
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    28   6.4  

>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 177 ECDNLTDSVEIYGIHDNRLN-NKKIRNYYLKKICILLNLNFKHVI 308
           +CD    SV +YG  D+ L  N K+ N  + K C  + + FKHV+
Sbjct: 358 DCD-ARQSVYVYGCKDSVLQVNGKVNNITVDK-CTKVGIVFKHVV 400


>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 564 KSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFETIAKKMLQ 692
           KSR+ I K+   I Y +AN   A  +D +    F+T+A KM++
Sbjct: 439 KSRLDIGKSVTKIAYHRANGLLATVADDMVLILFDTVAMKMVR 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,588
Number of Sequences: 37544
Number of extensions: 240745
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)