Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h23
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3)                      30   1.6  
SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)                 29   2.8  
SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)                     29   3.7  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   6.5  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   6.5  

>SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 225 NRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKL-CDATRAKEWQTMSRER 395
           N L +  I N  L+ +C  L+L + H++  +    HI   + C AT+  +WQ  SRER
Sbjct: 326 NDLVSDHIINNELRTLCGSLSLRYGHLMGLAAGVLHIARHVDCPATKILDWQAQSRER 383


>SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3)
          Length = 466

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 234 NNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRERRLKNFN 413
           N KKIR + L+   +  N  F      + DKN ++  + D TR     T+  + RLK+ N
Sbjct: 183 NEKKIRRFSLQARNLSKNDGFVEESMGNLDKNEVIKSVSDITR-----TVLEKPRLKSIN 237


>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
          Length = 170

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 60  MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG 215
           M+  +Q + +S +  +  T  DEN+ DN+    E+ +   C+ L   +  +G
Sbjct: 97  MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWG 148


>SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 504 LPFYKYISICKNGVMVRRDEKSRVFI---VKNEQNIEYLKANKYYAFHSDSVDNFEFETI 674
           L + K +S     +++   +K++ +I    K  +N+EY+K  +YY+   D+  N     I
Sbjct: 151 LEYLKTLSPTVRDLLIEAGDKAKRYIDRMKKTGENVEYMKVAQYYSSALDTAMNIGVPMI 210

Query: 675 A 677
           A
Sbjct: 211 A 211


>SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)
          Length = 444

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 26/119 (21%), Positives = 50/119 (42%)
 Frame = +3

Query: 291 NFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRERRLKNFNLNINYDGPVKIFVAATAEQ 470
           N++H++E         +++C+     EW+ + +ER L       ++D   K F  A  + 
Sbjct: 301 NYRHIVEQQESLIEDDSRMCE-----EWERLQQERALYE-KQKKSFDEERKNFTDAAVKL 354

Query: 471 KLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDS 647
               KK  +    +YK   +       R   KSR+F+ +     E+  + K+    +DS
Sbjct: 355 GHERKKFEEERTAYYKQQLMIT--PQSRTSAKSRLFLFRGNLITEHPSSIKHRRLLADS 411


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 39   HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 209
            H+ + +++ Q   L+ V L+ S ++T I+    V D   KS  E + ++ C       E 
Sbjct: 811  HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867

Query: 210  YGIHDNRLNNKKIRN 254
            YG++DN+++   + N
Sbjct: 868  YGVYDNKVSTLALCN 882


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 632 SVIFVGFEIFNILLIFNNKHATFFVASHHNTVFTNGNVFVKRQQSVTS 489
           ++I +   I NI +I NN +         N +  N N+ +K   S T+
Sbjct: 422 NIIIINNNIININIIINNNNIIINNIIIKNIIINNNNIIIKISSSTTT 469


>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 429 DGPVKIFVAATAEQKLLLKKTRDALLPF-YKYISICKNGVMVRRDEKSRVFIVKNEQNIE 605
           D  + I  + TA  K + K        F +K+I      V++R+DE S    +K+ Q++ 
Sbjct: 299 DNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGKVLIRKDEHSPAIQIKSLQHLA 358

Query: 606 YLKANK 623
            L++ +
Sbjct: 359 DLRSEQ 364


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 659 KIINAIAMKSVIFVGFEIFNILLIFNNKHATFFVASHHNTVFTNGNVFV 513
           +I NA  M SVIF G  +  +     +++   ++   +N++ T   V +
Sbjct: 116 RIANAFMMSSVIFTGVSVLTLTTATVDRYLALYLHLSYNSIVTVQRVLI 164


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +3

Query: 69  FEQLINVSLLKSLIKTQIDENV-SDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 245
           +E+L++  +    I  +  +++  D++ S   K+  + C    +  EIY   DN+L  ++
Sbjct: 457 YEELLSAHVQALPINERNGQHILRDSVTSPGSKVLTMYCKKQDNDKEIYNFKDNQLIIQR 516

Query: 246 IRNYYLKKICILLN---LNFKHVIESSFDKNHIVAKLCDAT 359
                +++    ++   L F   I SS     +VA  C  T
Sbjct: 517 KTRQEVQESAFAMDSKELKFNMEITSSSPLASVVAGFCVVT 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,465
Number of Sequences: 59808
Number of extensions: 318448
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)