Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h22
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   240   5e-64
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   239   9e-64
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    31   0.67 
At1g65720.1 68414.m07459 expressed protein                             29   1.5  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   4.7  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    28   4.7  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   4.7  
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   8.3  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    27   8.3  
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    27   8.3  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    27   8.3  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  240 bits (587), Expect = 5e-64
 Identities = 113/145 (77%), Positives = 126/145 (86%)
 Frame = +3

Query: 60  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 420 RIHRLARYYKTKSVLPPNWKYESST 494
           RIHRLARYYK    LPP WKYES+T
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTT 145


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  239 bits (585), Expect = 9e-64
 Identities = 113/145 (77%), Positives = 125/145 (86%)
 Frame = +3

Query: 60  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 420 RIHRLARYYKTKSVLPPNWKYESST 494
           RIHRLARYYK    LPP WKYES+T
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTT 145


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 96  GRYPYQERAYDPCLRLFT 43
           GRYP+  RAYDPC   ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 268 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 113
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 146 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 262
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 307 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 209
           +  R I +++RR+ LP+ N  +  PC  L+  P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 140 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 226
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +3

Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
           A VR    K+     K M  +  +P+   Y   +A+   K   +NRKDK +   L ++ S
Sbjct: 634 AFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINS 691

Query: 420 RIHRLARYYKTKSVLPPNWKYESS 491
           +  R+    KTK      WKY+++
Sbjct: 692 KFGRVKA--KTKGKKDEFWKYKTN 713


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 87  GISQSALPYRRSVPTWL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 263
           GI+   + Y   +     K + DD+     +L K G  P  I           +  FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 264 KKILRIMKAMGLAPDL 311
            +I  +MK+  L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 161 GTNLQTWKEGSHSLTNWCNAE 223
           GTN ++ KE   SLT+W  AE
Sbjct: 70  GTNNESMKETGQSLTSWVEAE 90


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 260 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 165
           +YESY+G  M + QHY +   S+T L   V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 146 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 247
           C  C G  L   K+GS ++   CN +G    CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P46825 Kinesin light chain
           (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
           TPR Domain
          Length = 1797

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 59  HGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 238
           +G  A +W   +P  AA  P     + ++  R  G      ++GS+ L  W N   F  S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335

Query: 239 CPSK 250
            P K
Sbjct: 336 MPCK 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,854
Number of Sequences: 28952
Number of extensions: 227499
Number of successful extensions: 647
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)