Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h21
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538...    44   1e-04
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    29   4.2  
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025...    29   4.2  

>07_03_1472 -
           26753070-26753177,26753254-26753531,26753691-26753865,
           26754974-26755468
          Length = 351

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +2

Query: 281 KRFYRGTAVIQND--NKWEVTLDHRRLXTPNGNVLTVGNEPLARAVAVEWDSQ 433
           KRFYR   V + D  N W V LD+R L +P    L + +  LA A+A EW+ Q
Sbjct: 83  KRFYREATVRRADDGNGWSVMLDYRTLKSPAKRPLKLQSRTLAMAIAAEWEYQ 135


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +2

Query: 383 VGNEPLARAVAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTL 562
           VG +PL + +AV+W   +E      +H  +L  +  +   K+    ++N  +   P   L
Sbjct: 686 VGGDPLLKLIAVDWFKADERFDSVALHPKSLVQS--EAAKKIPFILVINLQVPAKPNYNL 743

Query: 563 LFY 571
           + Y
Sbjct: 744 VMY 746


>06_03_1286 -
           29000688-29001526,29001982-29002075,29002480-29002581,
           29002638-29002710,29003747-29003804,29003859-29003904,
           29003985-29004111,29004198-29004273,29004348-29004405,
           29004490-29004588,29004679-29004807,29005333-29005454,
           29005567-29005735,29005829-29005929,29006082-29006208,
           29006284-29006373,29006516-29006602,29006703-29006963,
           29007029-29007058
          Length = 895

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 182 IIIMRIFTLASGISTLLKTRCTLCSIYRPYA 274
           II MR+  L  G+S  L  R     I RP+A
Sbjct: 414 IIFMRVLNLLRGLSASLNVRIVYLDIMRPFA 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,249,843
Number of Sequences: 37544
Number of extensions: 320253
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)