Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h21
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05)                 56   2e-08
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        29   4.3  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   7.5  

>SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05)
          Length = 123

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = +2

Query: 410 VAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDT------LLFY 571
           +A EW+ Q  TI  A+MHLT+L NT +D P + +    +  +LEY  TDT      L F 
Sbjct: 1   MASEWNMQTGTIKPASMHLTSLANTVIDKPSECSKDQRIEDILEYLYTDTVRYMYFLDFP 60

Query: 572 SXXXXXXXXXXXXKWTPILDWFQKTF 649
           +            +W P++ WF   F
Sbjct: 61  ASDPDDLVELQKTEWGPLISWFSSRF 86


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +2

Query: 215  GISTLLKTRCTLCSIYRPYATRKRFYRGTAVIQNDNKWEVTLDHRRLXTPNGNVLTVGNE 394
            G S+  ++   L S+ R      ++ +  ++IQ  +K+E+     +L +  G   T+G E
Sbjct: 3888 GGSSPRESGSVLASVERFDPKYNKWEKMESLIQARSKFELAEVEGKLYSIGG---TIGGE 3944

Query: 395  PLARAVAVE-WDSQNET-ISQATMH-LTALCNTAL 490
            PL R  AVE +D  N T  S+A  H L   C+TA+
Sbjct: 3945 PLTRDNAVECYDQVNNTWSSRAAPHQLRHFCSTAV 3979


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 383  RLIHSHLVXLDVDDPKSLPICCHSESQLSPYKIFYV*HMDDIYCIG 246
            R+ + H++   +  P++L + C SE  +SP +  +   +DD+ C G
Sbjct: 881  RIRNGHVICRHLGYPRALSVSCCSEFGISPSRRIW---LDDVICRG 923


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 248 LCSIYRPYATRKRFYRGTAVIQNDNKWEVTLDHR 349
           + +IYR Y  +   Y  ++++ N   W+V L +R
Sbjct: 280 ISNIYRYYQGKPNLYINSSIVHNGRAWDVELLYR 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,884,597
Number of Sequences: 59808
Number of extensions: 415921
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)