Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h21
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...    81   5e-16
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
 Frame = +2

Query: 281 KRFYRGTAVIQNDNK------WEVTLDHRRLXTPNGNVLTVGNEPLARAVAVEWDSQNET 442
           K+FY+  +VI   ++       +V LDHR L T  G VL + + PLA A+A EW SQ+E 
Sbjct: 24  KKFYKEVSVINETDESTGNQIHKVLLDHRVLKTQGGQVLKLDSYPLALAIAEEWSSQDEF 83

Query: 443 ISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXXKWTP 622
           +    M LT L  TA DNP + T+  I   +L+Y   DT+LF++            KW P
Sbjct: 84  LQLGQMRLTGLAFTAQDNPLEQTADTISQKILDYVEGDTVLFFNTESSKLHRYQEEKWAP 143

Query: 623 IL 628
           ++
Sbjct: 144 LI 145


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 484 CSGQSRKIDIT*HCQLPFGILSYRHTFILF 573
           C G+ +K+D++   Q PFG LS    F +F
Sbjct: 302 CLGRDKKLDLSGRPQRPFGPLSTSKVFRVF 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,664
Number of Sequences: 27780
Number of extensions: 326984
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)