Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h21
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   4.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 522 LSITFWNIILQTHFYFILRMKKN*GIFKKENGHQY 626
           L +TF NI+   +  ++LR KK  G+ + +   +Y
Sbjct: 259 LELTFENILSHINTVYVLRTKK--GVMRVDASEEY 291


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 522 LSITFWNIILQTHFYFILRMKKN*GIFKKENGHQY 626
           L +TF NI+   +  ++LR KK  G+ + +   +Y
Sbjct: 259 LELTFENILSHINTVYVLRTKK--GVMRVDASEEY 291


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 337 FGSSTSXNTKWECINRRE 390
           +GSS   NTK +C+  RE
Sbjct: 333 WGSSDDINTKAKCLQFRE 350


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 362 PNGNVLTVGNE 394
           P+G V+T+GNE
Sbjct: 18  PDGQVITIGNE 28


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 178 THYNNENIYSGFWYFNFTENTMYPM 252
           ++YNN+N Y+   Y+N       P+
Sbjct: 94  SNYNNDNNYNKKLYYNINYIEQIPV 118


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 139 YRYSLN*KYNYS 104
           Y+Y+ N KYNY+
Sbjct: 96  YKYNYNNKYNYN 107


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 200 FTLASGISTLLKTRCTLCSIYRPYATRKRFYRGTA 304
           FTL +GI  +  +  T    Y P A+   +Y  TA
Sbjct: 245 FTLKNGICGMALSPVTNNLYYSPLASHGLYYVNTA 279


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 304 SCPPIKSFTCSI 269
           SCP ++++TC I
Sbjct: 66  SCPVLRAYTCPI 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,172
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)