Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h21
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40660.1 68418.m04936 ATP12 protein-related weak similarity t...    55   5e-08
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    31   0.66 
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    31   0.66 
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa...    27   8.1  

>At5g40660.1 68418.m04936 ATP12 protein-related weak similarity to
           SP|P22135 ATP12 protein, mitochondrial precursor
           {Saccharomyces cerevisiae}
          Length = 325

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = +2

Query: 281 KRFYRGTAVIQND--NKWEVTLDHRRLXTPNGNVLTVGNEPLARAVAVEWDSQ-NETISQ 451
           KRFY+     + D  N W V LD+R L TP+   L + +  LA+A+A EW+ Q  E I  
Sbjct: 87  KRFYKKVTTREADDGNGWTVMLDYRTLKTPSKRPLKLRSLALAKAIAAEWEYQLTEGIRP 146

Query: 452 ATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLF 568
            TM L  L  TAL+    LT   I+ +L      D + F
Sbjct: 147 FTMPLMRLACTALERV-PLTRSKIIEHLSRKIHQDLVFF 184


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320 NKWEVTLDHRRLXTPNGNVLTVGNEPLAR--AVAVEWDSQNETISQATMHLTALCN 481
           NK  V +D   +   +G   T+ N  L R  A+ VEWD  N    QA + L  +CN
Sbjct: 302 NKTNVLIDAFPIRN-DGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCN 356


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320 NKWEVTLDHRRLXTPNGNVLTVGNEPLAR--AVAVEWDSQNETISQATMHLTALCN 481
           NK  V +D   +   +G   T+ N  L R  A+ VEWD  N    QA + L  +CN
Sbjct: 302 NKTNVLIDAFPIRN-DGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCN 356


>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 359

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
 Frame = -3

Query: 491 PEQYYTMRSNAWW--LVKLFHFV---------NPILQQQHEQEVHSLRLIHSHLVXLDVD 345
           P QY+T     WW  +++  ++           P L+QQ+ ++V +   +H   V L+VD
Sbjct: 78  PPQYFTTAQPNWWGPMMRPAYYCPPQPQTQPPKPYLEQQNAKKVRNDVNVHRDTVRLEVD 137

Query: 344 D 342
           D
Sbjct: 138 D 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,219
Number of Sequences: 28952
Number of extensions: 282935
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)