Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h17
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   4.0  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    26   7.0  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   9.2  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 349 LPMSTLTKLNFTDYSVKVNKTYPETSDQR-DNRLNYEQALASVARLNYELEQSVTGSGKL 525
           L +  L  +N+ +  +  +  + E   Q  +N L  E+ L + A++ +ELE +V  + ++
Sbjct: 331 LEIGDLESINYVEKMLNDDTYFQEMVIQMCENLLYRERLLRTQAKIWHELEMAVKTTTRI 390

Query: 526 HYAD 537
            +AD
Sbjct: 391 SFAD 394


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 340 PLDLPMSTLTKLNFTDYSVKVNKTYPETSDQRDNRLNYEQ-ALASVARL-NYELEQSVTG 513
           PL+L    L  +  T  +  + +   +   +RD   N +   L+ ++++ N+    SVT 
Sbjct: 136 PLELIRVRLAYITNTGKNPTLTQVTKDIFHERDFLCNKKYPGLSRLSKICNFYRGFSVTL 195

Query: 514 SGKLHYADQNRLAYDPAVD 570
           +G   YA  + LAYD A D
Sbjct: 196 TGIFPYAGMSFLAYDLATD 214


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 631 KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVAF 518
           +EY ++F D+  GK      C L + +PI S+   +AF
Sbjct: 369 EEYILNF-DIPNGKSDLEVLCALDEFIPIFSEVDRIAF 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,180
Number of Sequences: 5004
Number of extensions: 45118
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)