Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h17
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_36753| Best HMM Match : Death (HMM E-Value=1.8e-11)                 29   4.2  
SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/90 (22%), Positives = 39/90 (43%)
 Frame = +1

Query: 304 TPREAAVPPCAAPLDLPMSTLTKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARL 483
           TP + A+PP      +   +L     T ++V+V+      +D   + L+ +Q L  +A L
Sbjct: 156 TPYQLAIPPPGQDGRVIQDSLDAAESTSFNVEVDDLIVMGTDGLFDNLSTDQILTEIAEL 215

Query: 484 NYELEQSVTGSGKLHYADQNRLAYDPAVDT 573
                +S+             LA+DP+ ++
Sbjct: 216 QDYDAESIQSLADSLAMKARCLAFDPSYES 245


>SB_36753| Best HMM Match : Death (HMM E-Value=1.8e-11)
          Length = 100

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 601 VEGKEGRRTWCPLRDRMPICSD---RHSVAFPNQSPIALVH 488
           V G  G R W PL  ++ IC D     S+ +PN+S   L H
Sbjct: 17  VSGLIGERDWKPLAVQLGICDDVIQAASLRYPNRSREQLYH 57


>SB_2394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +1

Query: 361 TLTKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARLNYELEQ 501
           ++++LN++   + +++     +    + LNY  A  S++ LNY + Q
Sbjct: 254 SISELNYSMAQISISELNYSMAQVSISELNYSMAQVSISELNYSMAQ 300


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 552 IRSRSGHHVRRPSLPSTRSEKSIS 623
           +RSR+G  +R PS P+T S ++ S
Sbjct: 213 LRSRAGSRIRTPSTPTTTSSRASS 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,716
Number of Sequences: 59808
Number of extensions: 343433
Number of successful extensions: 1042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)