Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h17
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 436 DNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQ 603
           D+ + Y    A+V RLN    + +   G++ +       YD  +  + A P   LQ
Sbjct: 44  DDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQDSGYDKILQVLGATPRDFLQ 99


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 436 DNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQ 603
           D+ + Y    A+V RLN    + +   G++ +       YD  +  + A P   LQ
Sbjct: 44  DDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQDSGYDKILQVLGATPRDFLQ 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 35   EALNWCAPNRR 3
            E LN CAPNRR
Sbjct: 1690 EELNHCAPNRR 1700


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 65  RTIKIGIYLVESEFKVQREIILHR 136
           R  ++   + ESEF++Q +IIL R
Sbjct: 507 RNFRVRSDVKESEFRLQADIILKR 530


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 350 RSRGAAHGGTAASRGVSTSSIADRAPAPTHYYN 252
           RSR     G +    +  S   ++ PAP +Y N
Sbjct: 314 RSRDRRGRGRSREHRIIPSHYIEQIPAPVYYGN 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,761
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)