Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h17
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51480.1 68418.m06385 multi-copper oxidase type I family prot...    38   0.006
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    32   0.49 

>At5g51480.1 68418.m06385 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase;
           similar to pollen-specific protein
          Length = 592

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +1

Query: 367 TKLNFTDYSVKVNKTYPETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNR 546
           +++NFTD+ V V ++Y        N  +    +AS   +N  + Q VTG G LHY++   
Sbjct: 256 SQMNFTDFDVHVGQSYSFLVTMDQNATSDYYIVASARFVNETVWQRVTGVGILHYSNSKG 315

Query: 547 LAYDP 561
            A  P
Sbjct: 316 PASGP 320


>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 367 TKLNFTDYSVKVNKTYP--ETSDQRDNRLNYEQALASVARLNYELEQSVTGSGKLHYAD 537
           ++ NFTD+ V V ++Y    T DQ D   +Y   +AS   +N  + Q VTG   LHY++
Sbjct: 257 SQANFTDFDVHVGQSYSFLVTMDQ-DATSDY-YIVASARFVNETVWQRVTGVAILHYSN 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,722
Number of Sequences: 28952
Number of extensions: 227392
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)