Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h16
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.59 
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   1.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.4  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.2  
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    26   4.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/71 (19%), Positives = 31/71 (43%)
 Frame = +1

Query: 247 PNPNVTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCI 426
           P  N  SF N   S  + F+ +    +  +    +D  + ++  +FI     L +W+  +
Sbjct: 417 PYSNTVSFDNFFNSLELIFVIMSSNGFTDIMYDIMDAEYFVSCLLFIISAYFLTLWLMSL 476

Query: 427 ITTYISTLFYD 459
           +   +++ F D
Sbjct: 477 VIAVVTSSFID 487


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 223 IQILGSLTPNPNVTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFIC 390
           IQ    L     + +F   +A+F + F   GFL Y  LF++ V   FI+   +++C
Sbjct: 222 IQFQRILFAESPILTFTASVAAF-IEFFLSGFLSYKSLFVWNVLFAFILP-RLYVC 275


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 432 NIYFDSIL**IFTIASAMPCQSELPNNNCYGNIWDHGIDF 551
           N YFDS     F  AS+MP   + P NN + N    G+DF
Sbjct: 77  NEYFDSK----FASASSMPSSKDNPQNNDFTNSL-QGLDF 111


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +1

Query: 55  IMLLFKFGLIILFSTFITSICFQIL 129
           + L F+ GL+++  T++ S+C+ ++
Sbjct: 14  LALPFRIGLLVIVGTWLWSVCYHLI 38


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 261 DFLCKQDCFLFSLIYLFGLSD 323
           ++ C +DCFL S  Y+  LSD
Sbjct: 112 NYYCSKDCFLKSCQYMVELSD 132


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 319  LIYAFLFL-FKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTL 450
            L ++ LF  F   + ++ +  + +  FGT+ +WI  +I  +ISTL
Sbjct: 1472 LSFSLLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYFWISTL 1516


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 140 IPWILALLFCTLPV 181
           +PW L+L  CT+P+
Sbjct: 381 LPWFLSLFLCTMPL 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,381
Number of Sequences: 5004
Number of extensions: 66107
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)