Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h16
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0203 + 1555471-1555523,1555743-1555863,1556340-1556651,155... 31 1.1
12_02_0309 - 17342900-17342904,17343860-17343887,17344003-173441... 29 2.5
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 29 2.5
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771... 29 2.5
06_03_0153 + 17300907-17301455 29 4.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 29 4.3
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 29 4.3
02_05_0739 + 31401372-31402371,31402667-31402719 28 5.7
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 28 7.5
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 28 7.5
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 7.5
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 27 9.9
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867... 27 9.9
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 27 9.9
>06_01_0203 +
1555471-1555523,1555743-1555863,1556340-1556651,
1556806-1556910,1557009-1557466,1557886-1558187,
1558300-1558481,1558893-1559083,1559248-1559381,
1559487-1559725
Length = 698
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 370 ALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFL 507
A+ IF+ G + + ++ TYIS +F D+ LL++ Q V +
Sbjct: 545 AVAIFLAILGLTVLPVNAVVGTYISNMFEDRQLLMVSQITLLVGII 590
>12_02_0309 -
17342900-17342904,17343860-17343887,17344003-17344122,
17344252-17344413,17344655-17344865,17344980-17345016,
17345965-17346016
Length = 204
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 319 LIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKV 498
+++ F L K + +I +N C T+YI + + +F K LLLL + V
Sbjct: 58 MLWIFYALIKSNEALLITINAAGCVIETIYIVMYLAYAPKKAKVFTTKILLLLNVGVFGV 117
Query: 499 SFLIIIVMA 525
L+ ++++
Sbjct: 118 ILLLTLLLS 126
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = +1
Query: 319 LIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKV 498
+++ + L K D +I +N C T+YI + + + +F K LLL+ + +
Sbjct: 58 MLWIYYALLKSDECLLITINSAGCVIETIYIAVYLVYAPKKAKMFTAKLLLLVNVGVFGL 117
Query: 499 SFLIIIVMA 525
L+ ++++
Sbjct: 118 ILLLTLLLS 126
>11_02_0047 +
7716315-7716420,7716518-7716647,7716785-7716856,
7717007-7717078,7717274-7717345,7717684-7717845,
7718105-7718176,7718435-7718503,7718788-7718859,
7718992-7719129,7719386-7719888,7720007-7720171,
7720267-7720403,7720488-7720707,7720793-7721028,
7721165-7721632
Length = 897
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 241 LTPNPNVTSFAN-RIASFSVSFIYL-GFLIYAFLFLFKVDNTFIIALNIFICGFGTLY 408
L P P S+A+ I S S+S +L G ++ F L K+ N+F A +I G+G +Y
Sbjct: 535 LQPQPRSPSYASWDIKSTSISTPHLQGARVFTFDELKKITNSFSDANDIGTGGYGKVY 592
>06_03_0153 + 17300907-17301455
Length = 182
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 551 KVDAMVPNIAITIIIRKLTLARHCR 477
+VD ++PN A+ II+ +A HCR
Sbjct: 10 RVDDLIPNHALRCIIQAWCVANHCR 34
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 225 SNTWFINTKSKCDFLCKQDCFLFSLIYLFG 314
+NT +++++ CD C+Q C LFS+ +L G
Sbjct: 1024 TNTSNVSSQA-CDLFCQQSCRLFSIRFLGG 1052
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 510 NNCYGNIWDH--GIDFTSRWFRRDLLL 584
NN YG +DH G+ F +RW + DL++
Sbjct: 147 NNMYGMGFDHSFGLWFVARWLKPDLMI 173
>02_05_0739 + 31401372-31402371,31402667-31402719
Length = 350
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 543 IDFTSRWFRRDLLLLYNNVSLQQFVGGNILC 635
I++ SRW + + + ++Q+FV NI+C
Sbjct: 97 IEYFSRWIEAEAVARITSAAVQKFVWKNIIC 127
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 376 NIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIF--GTMAST 549
+I I G TL + I + + +FLLL + V+ I+I++ I GTM
Sbjct: 568 SILISGLTTLLMLPSIGIAMRLMDMSGRRFLLLATIPILIVALAILILVNILDVGTMVHA 627
Query: 550 LPAGGSGVIYFCY 588
+ S ++YFC+
Sbjct: 628 SLSTVSVILYFCF 640
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 325 YAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLL---LRQCLAK 495
++ +F+ ++ +T L L +W + + +S++FYDK LLL L +
Sbjct: 701 FSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAFGYNNILIR 760
Query: 496 VSFLIIIVMAIFGTM 540
++ + I + A G +
Sbjct: 761 IAGITIFICATVGVL 775
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.9 bits (59), Expect = 7.5
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 85 ILFSTFITSICFQILKETNSLDTGLAFLYIASGAIAGKIIYD--RYQQIQILGSLTPNPN 258
ILFST FQI++ET + + + +IAGK + Q +L SL P
Sbjct: 1742 ILFSTVCPGRDFQIIQETRTCNAQALLSLCTNDSIAGKGALEICITQMRDVLSSL-QLPL 1800
Query: 259 VTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNT 360
S N ++ + Y+ L YA L K+ T
Sbjct: 1801 NASMDNIARAYHATETYVQALSYAKNLLKKLVGT 1834
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 370 ALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFLI 510
A+ IF+ G + + I+ +YI+ LF D+ +L+ + + + ++
Sbjct: 572 AVAIFLAILGCTVLPVNAIVGSYITNLFEDRQILVASEIMVLIGIIM 618
>02_05_0083 +
25684816-25685383,25685474-25685499,25686325-25686718,
25687726-25687814,25687924-25687980,25688341-25688408,
25688511-25688617,25688698-25688768,25688844-25688912
Length = 482
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 484 CLAKVS-FLIIIVMAIFGTMASTLPAGGSGVIYFCYITTSLCSNLSA 621
CL S F ++++ I G S+ G IYF +I T LC N SA
Sbjct: 211 CLESQSTFRFLLLLFIIGLFLSS---HHEGYIYFTFIDTLLCRNGSA 254
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 10 LFGIQHLPNKYYCFSIMLLFKFGLIILFSTFITSICFQILKE 135
+FG + P +Y +I+ + GL L+ FI IC Q + E
Sbjct: 239 MFGYEEHPYAFYAMAILAIVLVGL--LYGFFIAIICGQRITE 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,688
Number of Sequences: 37544
Number of extensions: 361454
Number of successful extensions: 853
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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